| SRR4457251 | 2nd_leaf | DAH4 | 0.34 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.43 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.13 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.42 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.08 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.39 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.54 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.62 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.44 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.43 | MC |
| SRR3745125 | anther | wt | 1.57 | MC |
| SRR358798 | callus | wt | 3.73 | MC |
| SRR5560727 | caryopsis | wild_type | 0.41 | MC |
| SRR5560729 | caryopsis | wild_type | 1.26 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.79 | MC |
| SRR4947495 | root | control | 2.68 | MC |
| SRR7265404 | coleoptile | 2dN | 3.31 | MC |
| SRR7265409 | coleoptile | 3dN | 3.82 | MC |
| SRR7265410 | coleoptile | 3dN | 2.87 | MC |
| SRR7265411 | coleoptile | 3dN | 3.17 | MC |
| SRR7265412 | coleoptile | 4dA | 2.72 | MC |
| SRR7265413 | coleoptile | 4dA | 3.35 | MC |
| SRR7265415 | coleoptile | 4dN | 3.17 | MC |
| SRR7265417 | coleoptile | 4dN | 3.40 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.76 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.44 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.21 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.63 | MC |
| SRR7265376 | embryo | 1hA | 3.15 | MC |
| SRR7265379 | embryo | 1hN | 2.06 | MC |
| SRR7265381 | embryo | 1hN | 2.32 | MC |
| SRR7265382 | embryo | 3hA | 3.44 | MC |
| SRR7265384 | embryo | 3hA | 2.69 | MC |
| SRR7265387 | embryo | 3hN | 2.66 | MC |
| SRR7265389 | embryo | 12hA | 4.74 | MC |
| SRR7265391 | embryo | 12hN | 2.56 | MC |
| SRR7265393 | embryo | 12hN | 4.16 | MC |
| SRR7265394 | embryo | 24hA | 4.03 | MC |
| SRR7265395 | embryo | 24hA | 4.65 | MC |
| SRR7265396 | embryo | 24hA | 2.75 | MC |
| SRR7265399 | embryo | 24hN | 3.53 | MC |
| SRR2338868 | endosprem | high_temperature | 0.78 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.54 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.76 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.93 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.94 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.24 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.37 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.78 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.67 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.31 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.06 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.84 | MC |
| SRR8060836 | leaf | wild_type | 1.10 | MC |
| SRR8240824 | leaf | wild_type | 0.91 | MC |
| SRR8240825 | leaf | wild_type | 0.91 | MC |
| SRR8240819 | leaf | wild_type | 1.49 | MC |
| SRR8240820 | leaf | wild_type | 1.72 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.68 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.08 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.09 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.79 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.56 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.49 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.08 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.76 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.67 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.96 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.75 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.08 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.05 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.54 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.63 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.84 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.59 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.10 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.75 | MC |
| SRR504365 | leaf | wt | 1.17 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.50 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.11 | MC |
| SRR6417968 | leaf | H2O_control | 1.01 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.24 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.35 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.93 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.02 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.11 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.97 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.50 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR1213692 | leaf | wt | 0.62 | MC |
| SRR1213693 | leaf | wt | 0.32 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.64 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.17 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.24 | MC |
| SRR6502090 | leaf | control | 0.72 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.11 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.67 | MC |
| SRR6502100 | leaf | control | 2.16 | MC |
| SRR6502102 | leaf | control | 1.20 | MC |
| SRR5856927 | leaf | control | 0.21 | MC |
| SRR5856929 | leaf | control | 0.50 | MC |
| SRR5856931 | leaf | salt | 0.88 | MC |
| SRR5856933 | leaf | control | 0.93 | MC |
| SRR5856934 | leaf | control | 1.28 | MC |
| SRR5856935 | leaf | control | 1.11 | MC |
| SRR5856936 | leaf | salt | 0.30 | MC |
| SRR5856937 | leaf | salt | 0.48 | MC |
| SRR5856938 | leaf | salt | 0.54 | MC |
| SRR6168975 | leaf | none (control) | 1.56 | MC |
| SRR6168980 | leaf | none (control) | 0.64 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.11 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.97 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.95 | MC |
| SRR8582888 | panicle | AM | 0.93 | MC |
| SRR8582889 | panicle | AM | 0.30 | MC |
| SRR8582890 | panicle | AM | 0.36 | MC |
| SRR5110432 | panicle | Dawn | 3.09 | MC |
| SRR4947496 | root | control | 0.70 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.99 | MC |
| SRR5110446 | panicle | Dusk | 2.15 | MC |
| SRR5110448 | panicle | Dusk | 1.52 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.39 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.70 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.66 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.54 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.40 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.95 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.71 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.28 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.34 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.81 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.65 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.99 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.13 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126147 | root | "mock,1_day" | 2.48 | MC |
| SRR5126148 | root | "mock,1_day" | 1.63 | MC |
| SRR5126149 | root | "mock,1_day" | 3.15 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.13 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.74 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.20 | MC |
| SRR5126153 | root | "mock,7_days" | 1.20 | MC |
| SRR5126155 | root | "mock,7_days" | 3.45 | MC |
| SRR5126157 | root | "mock,7_days" | 3.34 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.58 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.37 | MC |
| SRR5126165 | root | "mock,14_days" | 3.07 | MC |
| SRR5126169 | root | "mock,14_days" | 3.30 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.42 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.60 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.33 | MC |
| SRR1213695 | root | wt | 0.32 | MC |
| SRR4947480 | root | control | 1.63 | MC |
| SRR4947485 | root | Al | 1.25 | MC |
| SRR4947489 | root | control | 1.43 | MC |
| SRR4947491 | root | Al | 3.65 | MC |
| SRR4947493 | root | Al | 1.02 | MC |
| SRR4947498 | root | Al | 3.39 | MC |
| SRR4947499 | root | Al | 3.03 | MC |
| SRR4947500 | root | Al | 2.08 | MC |
| SRR4947501 | root | Al | 2.45 | MC |
| SRR4947505 | root | control | 2.09 | MC |
| SRR4947506 | root | Al | 1.76 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.89 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.19 | MC |
| SRR6502094 | root | control | 2.70 | MC |
| SRR6502095 | root | control | 1.70 | MC |
| SRR6502096 | root | control | 4.21 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.71 | MC |
| SRR6502108 | root | control | 1.93 | MC |
| SRR6441554 | seedling | wild_type | 0.26 | MC |
| SRR2154086 | seedling | wt | 1.51 | MC |
| SRR2154082 | seedling | wt | 2.14 | MC |
| SRR2154083 | seedling | wt | 1.48 | MC |
| SRR2154084 | seedling | wt | 3.63 | MC |
| SRR2154085 | seedling | wt | 1.43 | MC |
| SRR2154087 | seedling | wt | 1.39 | MC |
| SRR3098741 | seedling | wt | 1.59 | MC |
| SRR3098742 | seedling | wt | 1.88 | MC |
| SRR3098743 | seedling | wt | 1.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.49 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.31 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.57 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.68 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.63 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.94 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.51 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.81 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.61 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.36 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.63 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.61 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.43 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.22 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.73 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.59 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.82 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.56 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.75 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.69 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |