| SRR4457249 | 2nd_leaf | DAH4 | 1.47 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.51 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.47 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.77 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.06 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.59 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.89 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.84 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.67 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.21 | MC |
| SRR3745126 | anther | wt | 1.43 | MC |
| SRR3745127 | anther | wt | 2.32 | MC |
| SRR358795 | callus | wt | 6.43 | MC |
| SRR358796 | callus | wt | 8.49 | MC |
| SRR358797 | callus | wt | 5.60 | MC |
| SRR358798 | callus | wt | 6.34 | MC |
| SRR6320473 | carpel | wt | 3.48 | MC |
| SRR6320498 | carpel | wt | 2.11 | MC |
| SRR5560727 | caryopsis | wild_type | 2.62 | MC |
| SRR5560728 | caryopsis | wild_type | 3.74 | MC |
| SRR5560729 | caryopsis | wild_type | 3.45 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.21 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.51 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.21 | MC |
| SRR4947495 | root | control | 2.14 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.68 | MC |
| SRR7265403 | coleoptile | 2dN | 0.39 | MC |
| SRR7265404 | coleoptile | 2dN | 0.66 | MC |
| SRR7265405 | coleoptile | 2dN | 0.36 | MC |
| SRR7265410 | coleoptile | 3dN | 1.90 | MC |
| SRR7265412 | coleoptile | 4dA | 1.11 | MC |
| SRR7265415 | coleoptile | 4dN | 1.46 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.25 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.73 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.32 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.39 | MC |
| SRR7265388 | embryo | 12hA | 0.62 | MC |
| SRR7265389 | embryo | 12hA | 0.60 | MC |
| SRR7265390 | embryo | 12hA | 1.23 | MC |
| SRR7265396 | embryo | 24hA | 1.21 | MC |
| SRR7265397 | embryo | 24hN | 0.56 | MC |
| SRR7265398 | embryo | 24hN | 0.65 | MC |
| SRR2338866 | endosprem | control | 1.88 | MC |
| SRR2338867 | endosprem | control | 1.03 | MC |
| SRR2338868 | endosprem | high_temperature | 0.79 | MC |
| SRR2338869 | endosprem | high_temperature | 1.55 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.72 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.32 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.29 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.76 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.13 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.07 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.69 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.96 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.33 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.66 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.70 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.48 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.36 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.97 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.37 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.92 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.04 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.37 | MC |
| SRR1213691 | flower | wt | 2.32 | MC |
| SRR8060835 | leaf | wild_type | 0.90 | MC |
| SRR8060836 | leaf | wild_type | 0.63 | MC |
| SRR8060837 | leaf | wild_type | 0.63 | MC |
| SRR8240825 | leaf | wild_type | 1.33 | MC |
| SRR8240826 | leaf | wild_type | 0.68 | MC |
| SRR8240818 | leaf | wild_type | 1.60 | MC |
| SRR8240819 | leaf | wild_type | 2.25 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.88 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.33 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.57 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.95 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.75 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.53 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.49 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.68 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.80 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.42 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.21 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.39 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.45 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.59 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.42 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.10 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.41 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.05 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.75 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.42 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.90 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.05 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.75 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.42 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.90 | MC |
| SRR1761528 | leaf | drought | 1.05 | MC |
| SRR1761529 | leaf | drought | 0.75 | MC |
| SRR1761530 | leaf | control | 0.42 | MC |
| SRR1761531 | leaf | control | 0.90 | MC |
| SRR504365 | leaf | wt | 1.08 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.93 | MC |
| SRR6417967 | leaf | H2O_control | 0.65 | MC |
| SRR6417968 | leaf | H2O_control | 0.99 | MC |
| SRR6417969 | leaf | H2O_control | 0.51 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.36 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.46 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.91 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.60 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.61 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.44 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.69 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.81 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.65 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.58 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.24 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.97 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.10 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.10 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.84 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.42 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.97 | MC |
| SRR1213692 | leaf | wt | 0.86 | MC |
| SRR1213693 | leaf | wt | 0.40 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.20 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.61 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.31 | MC |
| SRR6502088 | leaf | control | 2.75 | MC |
| SRR6502089 | leaf | control | 2.51 | MC |
| SRR6502090 | leaf | control | 1.84 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.61 | MC |
| SRR6502101 | leaf | control | 0.58 | MC |
| SRR6502102 | leaf | control | 0.98 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.33 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.59 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.14 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.88 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.04 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 6.01 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR6168974 | leaf | none (control) | 0.98 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.66 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.43 | MC |
| SRR6168980 | leaf | none (control) | 0.46 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.62 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.96 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.96 | MC |
| SRR8582888 | panicle | AM | 0.92 | MC |
| SRR8582889 | panicle | AM | 0.79 | MC |
| SRR8582890 | panicle | AM | 0.41 | MC |
| SRR8582893 | panicle | PM | 0.61 | MC |
| SRR5110429 | panicle | Dawn | 0.70 | MC |
| SRR5110431 | panicle | Dawn | 0.36 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.14 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.13 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.23 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.95 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.87 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.46 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.12 | MC |
| SRR5110445 | panicle | Dusk | 2.39 | MC |
| SRR5110446 | panicle | Dusk | 0.59 | MC |
| SRR5110447 | panicle | Dusk | 2.32 | MC |
| SRR5110448 | panicle | Dusk | 0.97 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.36 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.40 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.49 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.11 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.26 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.90 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.13 | MC |
| SRR1633182 | panicle | WT | 0.50 | MC |
| SRR1633185 | panicle | WT | 0.59 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.79 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.53 | MC |
| SRR5126157 | root | "mock,7_days" | 3.34 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.62 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.80 | MC |
| SRR5126165 | root | "mock,14_days" | 2.60 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.09 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.72 | MC |
| SRR1213695 | root | wt | 0.74 | MC |
| SRR4947478 | root | control | 4.44 | MC |
| SRR4947479 | root | control | 2.08 | MC |
| SRR4947480 | root | control | 2.16 | MC |
| SRR4947481 | root | control | 3.92 | MC |
| SRR4947482 | root | Al | 3.04 | MC |
| SRR4947484 | root | Al | 3.28 | MC |
| SRR4947488 | root | control | 4.29 | MC |
| SRR4947497 | root | control | 3.45 | MC |
| SRR4947498 | root | Al | 3.27 | MC |
| SRR4947499 | root | Al | 3.73 | MC |
| SRR4947500 | root | Al | 2.80 | MC |
| SRR4947501 | root | Al | 5.36 | MC |
| SRR4947502 | root | control | 2.29 | MC |
| SRR4947504 | root | control | 3.93 | MC |
| SRR4947507 | root | Al | 2.59 | MC |
| SRR4947509 | root | Al | 1.73 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.83 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.04 | MC |
| SRR6441554 | seedling | wild_type | 2.20 | MC |
| SRR2154086 | seedling | wt | 0.84 | MC |
| SRR2154083 | seedling | wt | 2.59 | MC |
| SRR2154085 | seedling | wt | 2.59 | MC |
| SRR2154087 | seedling | wt | 1.84 | MC |
| SRR3098741 | seedling | wt | 1.08 | MC |
| SRR3098742 | seedling | wt | 1.65 | MC |
| SRR3098743 | seedling | wt | 0.95 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.48 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.18 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.65 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.90 | MC |
| SRR1944583 | seedling | no_treatment | 1.87 | MC |
| SRR358791 | seedling | wt | 1.05 | MC |
| SRR358792 | seedling | wt | 0.94 | MC |
| SRR358793 | seedling | wt | 1.22 | MC |
| SRR358794 | seedling | wt | 1.66 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.19 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.85 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.79 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.30 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.42 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.99 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.93 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.51 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.76 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.40 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.92 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.58 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.53 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.12 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.60 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.13 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.71 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.58 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.37 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.04 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.54 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.62 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 8.25 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.35 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.52 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.19 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.35 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.11 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.27 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.79 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.96 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.04 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.80 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.52 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 12.79 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.78 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.44 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.09 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.57 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.87 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.45 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.59 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.95 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.36 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.54 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.72 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.27 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.87 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.96 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.28 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.89 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.01 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.38 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.84 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.88 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.87 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |