| SRR358795 | callus | wt | 4.83 | MC |
| SRR358796 | callus | wt | 3.15 | MC |
| SRR358797 | callus | wt | 3.02 | MC |
| SRR358798 | callus | wt | 3.94 | MC |
| SRR4947495 | root | control | 2.71 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR8240819 | leaf | wild_type | 0.40 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR5856933 | leaf | control | 0.77 | MC |
| SRR5856934 | leaf | control | 0.59 | MC |
| SRR5856935 | leaf | control | 0.35 | MC |
| SRR5856936 | leaf | salt | 0.13 | MC |
| SRR4947496 | root | control | 4.51 | MC |
| SRR5126147 | root | "mock,1_day" | 2.62 | MC |
| SRR5126148 | root | "mock,1_day" | 2.81 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.70 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.58 | MC |
| SRR5126153 | root | "mock,7_days" | 2.57 | MC |
| SRR5126155 | root | "mock,7_days" | 2.66 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.99 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.15 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.13 | MC |
| SRR5126167 | root | "mock,14_days" | 3.39 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.40 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.88 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.82 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.06 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.24 | MC |
| SRR1213695 | root | wt | 0.47 | MC |
| SRR4947478 | root | control | 1.26 | MC |
| SRR4947479 | root | control | 1.61 | MC |
| SRR4947480 | root | control | 4.05 | MC |
| SRR4947481 | root | control | 5.24 | MC |
| SRR4947482 | root | Al | 1.18 | MC |
| SRR4947483 | root | Al | 0.91 | MC |
| SRR4947484 | root | Al | 0.64 | MC |
| SRR4947485 | root | Al | 0.64 | MC |
| SRR4947487 | root | control | 1.13 | MC |
| SRR4947488 | root | control | 3.12 | MC |
| SRR4947489 | root | control | 2.22 | MC |
| SRR4947490 | root | Al | 1.01 | MC |
| SRR4947491 | root | Al | 0.48 | MC |
| SRR4947492 | root | Al | 1.66 | MC |
| SRR4947493 | root | Al | 1.65 | MC |
| SRR4947494 | root | control | 2.11 | MC |
| SRR4947497 | root | control | 5.81 | MC |
| SRR4947498 | root | Al | 0.56 | MC |
| SRR4947499 | root | Al | 0.89 | MC |
| SRR4947500 | root | Al | 0.83 | MC |
| SRR4947501 | root | Al | 1.98 | MC |
| SRR4947502 | root | control | 4.11 | MC |
| SRR4947503 | root | control | 3.02 | MC |
| SRR4947505 | root | control | 5.23 | MC |
| SRR4947506 | root | Al | 1.26 | MC |
| SRR4947507 | root | Al | 0.91 | MC |
| SRR4947508 | root | Al | 2.42 | MC |
| SRR4947509 | root | Al | 2.47 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.98 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.05 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.00 | MC |
| SRR6502094 | root | control | 2.11 | MC |
| SRR6502095 | root | control | 1.69 | MC |
| SRR6502096 | root | control | 1.28 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.64 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.55 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.31 | MC |
| SRR6502106 | root | control | 1.15 | MC |
| SRR6502107 | root | control | 1.58 | MC |
| SRR6502108 | root | control | 1.40 | MC |
| SRR2154086 | seedling | wt | 2.85 | MC |
| SRR2154083 | seedling | wt | 0.75 | MC |
| SRR2154085 | seedling | wt | 3.70 | MC |
| SRR2154087 | seedling | wt | 1.89 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.34 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.94 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.01 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.28 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.43 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.95 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.58 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.45 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.40 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.76 | MC |