| SRR4457254 | 2nd_leaf | DAH12 | 0.53 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.74 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.46 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.10 | MC |
| SRR3745125 | anther | wt | 1.63 | MC |
| SRR3745126 | anther | wt | 1.02 | MC |
| SRR3745127 | anther | wt | 3.69 | MC |
| SRR358797 | callus | wt | 6.32 | MC |
| SRR358798 | callus | wt | 3.75 | MC |
| SRR5560727 | caryopsis | wild_type | 5.03 | MC |
| SRR4947495 | root | control | 3.24 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.99 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.08 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.65 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.03 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.41 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.10 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.46 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.93 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.46 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.59 | MC |
| SRR2338866 | endosprem | control | 3.26 | MC |
| SRR2338868 | endosprem | high_temperature | 1.19 | MC |
| SRR2338869 | endosprem | high_temperature | 1.76 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.34 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.31 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.61 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.35 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.48 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.57 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.88 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.54 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.25 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.42 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.50 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.98 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.62 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.75 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.82 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.07 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.56 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.02 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.26 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.40 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.03 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.48 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.52 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.56 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.64 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.75 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.25 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.80 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.04 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.24 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.25 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.43 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.96 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.93 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.72 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.99 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.89 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.60 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.76 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.89 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.60 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.76 | MC |
| SRR1761528 | leaf | drought | 0.89 | MC |
| SRR1761529 | leaf | drought | 1.60 | MC |
| SRR1761530 | leaf | control | 0.76 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.46 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.63 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.76 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.89 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.47 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.38 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.66 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.84 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.15 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.36 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.38 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.07 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.82 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.31 | MC |
| SRR6502088 | leaf | control | 2.18 | MC |
| SRR6502089 | leaf | control | 1.48 | MC |
| SRR6502090 | leaf | control | 1.05 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.42 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.03 | MC |
| SRR6502100 | leaf | control | 3.12 | MC |
| SRR6502101 | leaf | control | 2.24 | MC |
| SRR6502102 | leaf | control | 1.52 | MC |
| SRR6168979 | leaf | none (control) | 0.40 | MC |
| SRR8582888 | panicle | AM | 1.77 | MC |
| SRR8582889 | panicle | AM | 0.44 | MC |
| SRR8582890 | panicle | AM | 0.62 | MC |
| SRR5110429 | panicle | Dawn | 3.76 | MC |
| SRR5110430 | panicle | Dawn | 3.49 | MC |
| SRR5110431 | panicle | Dawn | 3.97 | MC |
| SRR5110432 | panicle | Dawn | 1.54 | MC |
| SRR4947496 | root | control | 3.69 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.94 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.94 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.34 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.92 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.76 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.61 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.38 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.26 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.50 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.84 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.67 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.60 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.52 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.89 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.41 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.07 | MC |
| SRR1633185 | panicle | WT | 1.38 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.13 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.75 | MC |
| SRR1213694 | root | wt | 1.64 | MC |
| SRR4947478 | root | control | 3.70 | MC |
| SRR4947487 | root | control | 2.42 | MC |
| SRR4947488 | root | control | 4.40 | MC |
| SRR4947490 | root | Al | 4.07 | MC |
| SRR4947491 | root | Al | 3.73 | MC |
| SRR4947492 | root | Al | 5.10 | MC |
| SRR4947493 | root | Al | 3.95 | MC |
| SRR4947499 | root | Al | 4.95 | MC |
| SRR4947500 | root | Al | 4.64 | MC |
| SRR4947504 | root | control | 5.17 | MC |
| SRR4947505 | root | control | 3.81 | MC |
| SRR6502094 | root | control | 4.55 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.66 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.17 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.78 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.29 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.31 | MC |
| SRR3098741 | seedling | wt | 0.63 | MC |
| SRR3098742 | seedling | wt | 0.91 | MC |
| SRR3098743 | seedling | wt | 1.58 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.13 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.58 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.71 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.49 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.67 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.58 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.89 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.77 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.01 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.37 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.04 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.80 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.20 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.78 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.59 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.97 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.46 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.63 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.62 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.02 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.99 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.66 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.96 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.66 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.33 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.17 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.89 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.93 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.67 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.73 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.18 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.51 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.68 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.91 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.58 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.35 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.54 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.15 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.49 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.39 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.38 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.66 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.67 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.86 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.07 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.17 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.34 | MC |