| SRR4457249 | 2nd_leaf | DAH4 | 2.32 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.74 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.34 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.58 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.15 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.16 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.96 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.40 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.01 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.07 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.04 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.77 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.17 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.43 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.41 | MC |
| SRR3745126 | anther | wt | 1.83 | MC |
| SRR5560727 | caryopsis | wild_type | 4.91 | MC |
| SRR5560728 | caryopsis | wild_type | 4.17 | MC |
| SRR7265404 | coleoptile | 2dN | 0.42 | MC |
| SRR7265406 | coleoptile | 3dA | 0.52 | MC |
| SRR7265411 | coleoptile | 3dN | 0.71 | MC |
| SRR7265415 | coleoptile | 4dN | 0.57 | MC |
| SRR7265417 | coleoptile | 4dN | 0.67 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.56 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.70 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.52 | MC |
| SRR7265378 | embryo | 1hA | 0.34 | MC |
| SRR7265379 | embryo | 1hN | 0.27 | MC |
| SRR7265380 | embryo | 1hN | 0.43 | MC |
| SRR7265388 | embryo | 12hA | 0.43 | MC |
| SRR7265393 | embryo | 12hN | 0.46 | MC |
| SRR7265395 | embryo | 24hA | 0.65 | MC |
| SRR7265396 | embryo | 24hA | 0.86 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.69 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.38 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.97 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.19 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.27 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.22 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.86 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.23 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.89 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.08 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.61 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.68 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.13 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.05 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.89 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.79 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.47 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.12 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.45 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.56 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.48 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.37 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.00 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.15 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.22 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.07 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.15 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.03 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.55 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.24 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.92 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.01 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.22 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.47 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.90 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.68 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.27 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.98 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.96 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.30 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.91 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.99 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.58 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.46 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.43 | MC |
| SRR504365 | leaf | wt | 2.12 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.02 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.58 | MC |
| SRR6417967 | leaf | H2O_control | 2.74 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.18 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.25 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.82 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.91 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.91 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.08 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.41 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.07 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.58 | MC |
| SRR1213692 | leaf | wt | 1.09 | MC |
| SRR5856930 | leaf | salt | 0.22 | MC |
| SRR5856933 | leaf | control | 1.18 | MC |
| SRR5856934 | leaf | control | 0.29 | MC |
| SRR5856935 | leaf | control | 0.22 | MC |
| SRR5856936 | leaf | salt | 0.25 | MC |
| SRR5856938 | leaf | salt | 0.41 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.02 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.38 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.81 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.14 | MC |
| SRR6168975 | leaf | none (control) | 3.39 | MC |
| SRR6168979 | leaf | none (control) | 0.38 | MC |
| SRR6168981 | leaf | none (control) | 0.90 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.28 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.84 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.20 | MC |
| SRR8582888 | panicle | AM | 3.14 | MC |
| SRR8582892 | panicle | PM | 6.90 | MC |
| SRR5110430 | panicle | Dawn | 2.06 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.17 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.01 | MC |
| SRR5110445 | panicle | Dusk | 1.96 | MC |
| SRR5110446 | panicle | Dusk | 1.77 | MC |
| SRR5110447 | panicle | Dusk | 1.83 | MC |
| SRR5110448 | panicle | Dusk | 2.34 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.29 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.03 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.35 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.78 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.61 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.00 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.13 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.55 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.45 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.56 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.92 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.40 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.09 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.27 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.31 | MC |
| SRR5126147 | root | "mock,1_day" | 0.71 | MC |
| SRR5126148 | root | "mock,1_day" | 0.82 | MC |
| SRR5126149 | root | "mock,1_day" | 0.99 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.68 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.86 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.59 | MC |
| SRR5126153 | root | "mock,7_days" | 0.56 | MC |
| SRR5126155 | root | "mock,7_days" | 1.00 | MC |
| SRR5126157 | root | "mock,7_days" | 1.05 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.74 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.47 | MC |
| SRR5126167 | root | "mock,14_days" | 1.10 | MC |
| SRR5126169 | root | "mock,14_days" | 1.50 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR1213694 | root | wt | 0.58 | MC |
| SRR1213695 | root | wt | 0.14 | MC |
| SRR2154086 | seedling | wt | 3.50 | MC |
| SRR2154082 | seedling | wt | 1.64 | MC |
| SRR2154083 | seedling | wt | 2.56 | MC |
| SRR2154085 | seedling | wt | 2.86 | MC |
| SRR2154087 | seedling | wt | 3.15 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.24 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.38 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.49 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.54 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.41 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.18 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.87 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.47 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.26 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.34 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.36 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.70 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.96 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.45 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.82 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.63 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.53 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.82 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.79 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.25 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.52 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.73 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.10 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.30 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.15 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |