| SRR4457249 | 2nd_leaf | DAH4 | 2.96 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.41 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.34 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.77 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.49 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.92 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.36 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.26 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.86 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.04 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.01 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.15 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.06 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.62 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.81 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.36 | MC |
| SRR3745125 | anther | wt | 1.97 | MC |
| SRR3745126 | anther | wt | 2.02 | MC |
| SRR3745127 | anther | wt | 2.45 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.94 | MC |
| SRR2338867 | endosprem | control | 0.54 | MC |
| SRR976168 | flag_leaf | wild_type | 0.47 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.79 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.97 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.31 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.91 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.29 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.81 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.70 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.33 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.82 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.07 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.58 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.48 | MC |
| SRR1213691 | flower | wt | 1.53 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.07 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.92 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.54 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.63 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.91 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.06 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.74 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.10 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.31 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.27 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.24 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.01 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.36 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.24 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.78 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.38 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.62 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.39 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.22 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.61 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.62 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.48 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.30 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.30 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.41 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.01 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.83 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.59 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.01 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.12 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.83 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.87 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.10 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.62 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.08 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.13 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.39 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.29 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.15 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.13 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.39 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.29 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.15 | MC |
| SRR1761528 | leaf | drought | 5.13 | MC |
| SRR1761529 | leaf | drought | 5.39 | MC |
| SRR1761530 | leaf | control | 5.29 | MC |
| SRR1761531 | leaf | control | 5.15 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.34 | MC |
| SRR6417967 | leaf | H2O_control | 1.84 | MC |
| SRR6417968 | leaf | H2O_control | 2.31 | MC |
| SRR6417969 | leaf | H2O_control | 3.20 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.73 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.38 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.77 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.98 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.64 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.97 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.38 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.87 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.88 | MC |
| SRR6502102 | leaf | control | 4.30 | MC |
| SRR8582888 | panicle | AM | 2.97 | MC |
| SRR8582892 | panicle | PM | 5.24 | MC |
| SRR5110431 | panicle | Dawn | 0.55 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.52 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.59 | MC |
| SRR5110445 | panicle | Dusk | 0.79 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.21 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.44 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.18 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.24 | MC |
| SRR1633185 | panicle | WT | 0.51 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.51 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.22 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.62 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.02 | MC |
| SRR5126147 | root | "mock,1_day" | 1.52 | MC |
| SRR5126148 | root | "mock,1_day" | 1.95 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.14 | MC |
| SRR5126155 | root | "mock,7_days" | 2.28 | MC |
| SRR5126157 | root | "mock,7_days" | 1.04 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.93 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.60 | MC |
| SRR5126165 | root | "mock,14_days" | 1.59 | MC |
| SRR5126167 | root | "mock,14_days" | 0.99 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.29 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.04 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.18 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.13 | MC |
| SRR1213694 | root | wt | 0.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.02 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502094 | root | control | 1.75 | MC |
| SRR6502095 | root | control | 1.91 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.26 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.51 | MC |
| SRR6502108 | root | control | 1.59 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.37 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.72 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.59 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.95 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.85 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.55 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.11 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.41 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.12 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.77 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.12 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.21 | MC |
| SRR358791 | seedling | wt | 2.97 | MC |
| SRR358792 | seedling | wt | 3.57 | MC |
| SRR358793 | seedling | wt | 4.76 | MC |
| SRR358794 | seedling | wt | 5.35 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.48 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.70 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.92 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.59 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.94 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.94 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.02 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.69 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.62 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.40 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.68 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.13 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.53 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.20 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.46 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.78 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.40 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.60 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.12 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.18 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.03 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.07 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.07 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.20 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.45 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.82 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.90 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.76 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.68 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.24 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.16 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.15 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.13 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.01 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.93 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.00 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |