| SRR358795 | callus | wt | 1.44 | MC |
| SRR5560727 | caryopsis | wild_type | 1.10 | MC |
| SRR5560728 | caryopsis | wild_type | 1.01 | MC |
| SRR5560729 | caryopsis | wild_type | 0.60 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.70 | MC |
| SRR7265409 | coleoptile | 3dN | 0.39 | MC |
| SRR7265410 | coleoptile | 3dN | 0.68 | MC |
| SRR7265411 | coleoptile | 3dN | 0.48 | MC |
| SRR7265415 | coleoptile | 4dN | 0.85 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR2338866 | endosprem | control | 2.97 | MC |
| SRR2338868 | endosprem | high_temperature | 0.71 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.22 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.38 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.20 | MC |
| SRR1213691 | flower | wt | 1.13 | MC |
| SRR8060836 | leaf | wild_type | 0.32 | MC |
| SRR8240825 | leaf | wild_type | 0.24 | MC |
| SRR8240826 | leaf | wild_type | 0.56 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.77 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.96 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.24 | MC |
| SRR1213692 | leaf | wt | 0.38 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.52 | MC |
| SRR6502090 | leaf | control | 0.83 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.37 | MC |
| SRR6502100 | leaf | control | 0.42 | MC |
| SRR6502101 | leaf | control | 0.37 | MC |
| SRR5856933 | leaf | control | 0.67 | MC |
| SRR5856934 | leaf | control | 0.30 | MC |
| SRR5856935 | leaf | control | 0.42 | MC |
| SRR5856936 | leaf | salt | 0.33 | MC |
| SRR5856937 | leaf | salt | 0.34 | MC |
| SRR6168973 | leaf | none (control) | 0.36 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.08 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.27 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.55 | MC |
| SRR5126147 | root | "mock,1_day" | 0.60 | MC |
| SRR5126148 | root | "mock,1_day" | 0.74 | MC |
| SRR5126149 | root | "mock,1_day" | 0.94 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.39 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.48 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.44 | MC |
| SRR5126153 | root | "mock,7_days" | 0.84 | MC |
| SRR5126155 | root | "mock,7_days" | 1.11 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.49 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.72 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.48 | MC |
| SRR5126165 | root | "mock,14_days" | 0.80 | MC |
| SRR5126167 | root | "mock,14_days" | 0.75 | MC |
| SRR5126169 | root | "mock,14_days" | 1.10 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.39 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.49 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.10 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.80 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.64 | MC |
| SRR4947501 | root | Al | 0.87 | MC |
| SRR4947508 | root | Al | 0.70 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502095 | root | control | 0.81 | MC |
| SRR6502096 | root | control | 0.48 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502107 | root | control | 0.72 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.22 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.28 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.00 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.10 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.12 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.43 | MC |
| SRR6441555 | seedling | wild_type | 0.54 | MC |
| SRR2154084 | seedling | wt | 1.53 | MC |
| SRR2154087 | seedling | wt | 0.71 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.29 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.81 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.63 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.15 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.56 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.64 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.45 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.31 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.39 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.33 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.65 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.50 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.35 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.06 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.48 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.81 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.60 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.56 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.35 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.66 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.01 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.81 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.97 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.96 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.90 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.96 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.54 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.65 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.88 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.47 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.94 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.90 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.62 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.51 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.60 | MC |