| SRR4457249 | 2nd_leaf | DAH4 | 0.72 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.87 | MC |
| SRR6320473 | carpel | wt | 2.89 | MC |
| SRR6320498 | carpel | wt | 5.27 | MC |
| SRR5560728 | caryopsis | wild_type | 0.37 | MC |
| SRR5560729 | caryopsis | wild_type | 0.40 | MC |
| SRR7265400 | coleoptile | 2dA | 3.36 | MC |
| SRR7265401 | coleoptile | 2dA | 3.48 | MC |
| SRR7265403 | coleoptile | 2dN | 3.09 | MC |
| SRR7265404 | coleoptile | 2dN | 3.18 | MC |
| SRR7265407 | coleoptile | 3dA | 2.06 | MC |
| SRR7265408 | coleoptile | 3dA | 2.80 | MC |
| SRR7265410 | coleoptile | 3dN | 1.64 | MC |
| SRR7265411 | coleoptile | 3dN | 2.05 | MC |
| SRR7265412 | coleoptile | 4dA | 2.00 | MC |
| SRR7265413 | coleoptile | 4dA | 2.89 | MC |
| SRR7265414 | coleoptile | 4dA | 3.05 | MC |
| SRR7265415 | coleoptile | 4dN | 2.62 | MC |
| SRR7265416 | coleoptile | 4dN | 2.24 | MC |
| SRR7265417 | coleoptile | 4dN | 2.75 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.76 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.27 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.59 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.92 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.90 | MC |
| SRR7265376 | embryo | 1hA | 3.44 | MC |
| SRR7265380 | embryo | 1hN | 2.68 | MC |
| SRR7265382 | embryo | 3hA | 3.74 | MC |
| SRR7265383 | embryo | 3hA | 1.91 | MC |
| SRR7265384 | embryo | 3hA | 2.90 | MC |
| SRR7265385 | embryo | 3hN | 3.93 | MC |
| SRR7265387 | embryo | 3hN | 3.07 | MC |
| SRR7265388 | embryo | 12hA | 4.73 | MC |
| SRR7265391 | embryo | 12hN | 3.57 | MC |
| SRR7265392 | embryo | 12hN | 3.28 | MC |
| SRR7265393 | embryo | 12hN | 4.43 | MC |
| SRR7265395 | embryo | 24hA | 4.80 | MC |
| SRR7265396 | embryo | 24hA | 3.32 | MC |
| SRR7265397 | embryo | 24hN | 4.96 | MC |
| SRR7265398 | embryo | 24hN | 3.56 | MC |
| SRR2338869 | endosprem | high_temperature | 0.79 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.78 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.37 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.45 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.53 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.61 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.74 | MC |
| SRR8060835 | leaf | wild_type | 0.82 | MC |
| SRR8060837 | leaf | wild_type | 0.56 | MC |
| SRR8240824 | leaf | wild_type | 0.24 | MC |
| SRR8240825 | leaf | wild_type | 0.67 | MC |
| SRR8240826 | leaf | wild_type | 0.41 | MC |
| SRR8240818 | leaf | wild_type | 0.43 | MC |
| SRR8240819 | leaf | wild_type | 0.50 | MC |
| SRR8240820 | leaf | wild_type | 1.30 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.82 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.46 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.73 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.58 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.19 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.71 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.63 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.97 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.97 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.23 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.22 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.89 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.82 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.79 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.74 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.82 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.75 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.49 | MC |
| SRR504365 | leaf | wt | 0.76 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.14 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.06 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.32 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.85 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR1213692 | leaf | wt | 1.41 | MC |
| SRR1213693 | leaf | wt | 0.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.18 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.26 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502088 | leaf | control | 1.32 | MC |
| SRR6502090 | leaf | control | 0.84 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.87 | MC |
| SRR6502100 | leaf | control | 0.97 | MC |
| SRR6502102 | leaf | control | 0.60 | MC |
| SRR5856935 | leaf | control | 0.48 | MC |
| SRR6168975 | leaf | none (control) | 0.36 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168980 | leaf | none (control) | 0.48 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.52 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.68 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR8582888 | panicle | AM | 0.44 | MC |
| SRR8582889 | panicle | AM | 0.18 | MC |
| SRR8582890 | panicle | AM | 0.26 | MC |
| SRR8582891 | panicle | PM | 1.09 | MC |
| SRR8582892 | panicle | PM | 2.19 | MC |
| SRR8582893 | panicle | PM | 0.48 | MC |
| SRR5110432 | panicle | Dawn | 0.92 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.27 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.51 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.21 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.58 | MC |
| SRR1633182 | panicle | WT | 1.55 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.67 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.61 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.11 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.75 | MC |
| SRR5126147 | root | "mock,1_day" | 0.67 | MC |
| SRR5126149 | root | "mock,1_day" | 1.64 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.83 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.83 | MC |
| SRR5126155 | root | "mock,7_days" | 2.39 | MC |
| SRR5126157 | root | "mock,7_days" | 1.26 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.89 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.69 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.15 | MC |
| SRR5126165 | root | "mock,14_days" | 0.77 | MC |
| SRR5126167 | root | "mock,14_days" | 1.79 | MC |
| SRR5126169 | root | "mock,14_days" | 0.82 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.97 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.73 | MC |
| SRR1213694 | root | wt | 0.81 | MC |
| SRR1213695 | root | wt | 0.71 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.80 | MC |
| SRR6502095 | root | control | 1.05 | MC |
| SRR6502096 | root | control | 0.74 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.14 | MC |
| SRR6502107 | root | control | 0.81 | MC |
| SRR6441554 | seedling | wild_type | 0.55 | MC |
| SRR2154086 | seedling | wt | 0.83 | MC |
| SRR2154082 | seedling | wt | 0.80 | MC |
| SRR2154085 | seedling | wt | 0.55 | MC |
| SRR2154087 | seedling | wt | 1.13 | MC |
| SRR3098741 | seedling | wt | 0.71 | MC |
| SRR3098742 | seedling | wt | 0.55 | MC |
| SRR3098743 | seedling | wt | 0.45 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.74 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.52 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.76 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.29 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.60 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.20 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.85 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.59 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.47 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.55 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.47 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.48 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.64 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.10 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.57 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.25 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.73 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.92 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.38 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.87 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.45 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.39 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.43 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.60 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.93 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |