| SRR4457260 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.51 | MC |
| SRR7265400 | coleoptile | 2dA | 0.83 | MC |
| SRR7265401 | coleoptile | 2dA | 0.85 | MC |
| SRR7265402 | coleoptile | 2dA | 0.85 | MC |
| SRR7265403 | coleoptile | 2dN | 0.76 | MC |
| SRR7265404 | coleoptile | 2dN | 0.90 | MC |
| SRR7265405 | coleoptile | 2dN | 1.07 | MC |
| SRR7265406 | coleoptile | 3dA | 0.50 | MC |
| SRR7265407 | coleoptile | 3dA | 0.51 | MC |
| SRR7265409 | coleoptile | 3dN | 1.43 | MC |
| SRR7265410 | coleoptile | 3dN | 0.88 | MC |
| SRR7265411 | coleoptile | 3dN | 0.79 | MC |
| SRR7265414 | coleoptile | 4dA | 0.54 | MC |
| SRR7265415 | coleoptile | 4dN | 0.58 | MC |
| SRR7265416 | coleoptile | 4dN | 1.02 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.38 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.51 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.98 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.00 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.22 | MC |
| SRR7265376 | embryo | 1hA | 0.67 | MC |
| SRR7265377 | embryo | 1hA | 0.72 | MC |
| SRR7265378 | embryo | 1hA | 0.91 | MC |
| SRR7265379 | embryo | 1hN | 0.40 | MC |
| SRR7265381 | embryo | 1hN | 0.39 | MC |
| SRR7265382 | embryo | 3hA | 0.49 | MC |
| SRR7265383 | embryo | 3hA | 1.53 | MC |
| SRR7265384 | embryo | 3hA | 1.20 | MC |
| SRR7265385 | embryo | 3hN | 0.49 | MC |
| SRR7265386 | embryo | 3hN | 0.96 | MC |
| SRR7265387 | embryo | 3hN | 0.67 | MC |
| SRR7265388 | embryo | 12hA | 1.13 | MC |
| SRR7265389 | embryo | 12hA | 1.73 | MC |
| SRR7265390 | embryo | 12hA | 1.15 | MC |
| SRR7265391 | embryo | 12hN | 1.10 | MC |
| SRR7265392 | embryo | 12hN | 1.45 | MC |
| SRR7265393 | embryo | 12hN | 0.79 | MC |
| SRR7265394 | embryo | 24hA | 0.55 | MC |
| SRR7265395 | embryo | 24hA | 1.46 | MC |
| SRR7265396 | embryo | 24hA | 1.54 | MC |
| SRR7265397 | embryo | 24hN | 0.99 | MC |
| SRR7265398 | embryo | 24hN | 1.07 | MC |
| SRR7265399 | embryo | 24hN | 0.76 | MC |
| SRR2338868 | endosprem | high_temperature | 0.76 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.69 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.49 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.06 | MC |
| SRR1213691 | flower | wt | 0.30 | MC |
| SRR8240824 | leaf | wild_type | 0.59 | MC |
| SRR8240819 | leaf | wild_type | 0.46 | MC |
| SRR8240820 | leaf | wild_type | 0.22 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.34 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.42 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.57 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.95 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.34 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.46 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.72 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.41 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.49 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.49 | MC |
| SRR1761529 | leaf | drought | 0.49 | MC |
| SRR504365 | leaf | wt | 0.32 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.57 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.32 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.61 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.39 | MC |
| SRR1213693 | leaf | wt | 0.26 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR5856936 | leaf | salt | 0.23 | MC |
| SRR5856938 | leaf | salt | 0.31 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR5110446 | panicle | Dusk | 0.38 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.46 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.71 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.48 | MC |
| SRR1633185 | panicle | WT | 0.33 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.98 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.01 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.55 | MC |
| SRR5126147 | root | "mock,1_day" | 0.81 | MC |
| SRR5126148 | root | "mock,1_day" | 0.45 | MC |
| SRR5126149 | root | "mock,1_day" | 0.50 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.11 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.76 | MC |
| SRR5126157 | root | "mock,7_days" | 0.37 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.73 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.74 | MC |
| SRR5126165 | root | "mock,14_days" | 1.20 | MC |
| SRR5126167 | root | "mock,14_days" | 0.77 | MC |
| SRR5126169 | root | "mock,14_days" | 0.91 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.48 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.24 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR1213695 | root | wt | 0.20 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502107 | root | control | 0.93 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.25 | MC |
| SRR2154082 | seedling | wt | 0.56 | MC |
| SRR2154083 | seedling | wt | 0.34 | MC |
| SRR2154084 | seedling | wt | 0.36 | MC |
| SRR2154087 | seedling | wt | 0.36 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.94 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.39 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.82 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.43 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.02 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.20 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.49 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.31 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.39 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.26 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.89 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.77 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.71 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.67 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.97 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.52 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.59 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.95 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.67 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.45 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |