| SRR4457252 | 2nd_leaf | DAH12 | 0.25 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.33 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.01 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.78 | MC |
| SRR358798 | callus | wt | 1.59 | MC |
| SRR6320473 | carpel | wt | 3.66 | MC |
| SRR6320498 | carpel | wt | 3.06 | MC |
| SRR5560729 | caryopsis | wild_type | 0.55 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.22 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.74 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR4947495 | root | control | 0.85 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.75 | MC |
| SRR7265408 | coleoptile | 3dA | 2.92 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.27 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.00 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.65 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.55 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.48 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.46 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.77 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.64 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.05 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.72 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.91 | MC |
| SRR7265376 | embryo | 1hA | 2.71 | MC |
| SRR7265377 | embryo | 1hA | 2.69 | MC |
| SRR7265380 | embryo | 1hN | 2.81 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.37 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.47 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.55 | MC |
| SRR1213691 | flower | wt | 0.43 | MC |
| SRR8060835 | leaf | wild_type | 0.34 | MC |
| SRR8060836 | leaf | wild_type | 0.35 | MC |
| SRR8240826 | leaf | wild_type | 0.29 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.73 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.69 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.62 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.56 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.57 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.29 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.48 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.97 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.94 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.44 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.59 | MC |
| SRR504365 | leaf | wt | 0.96 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.07 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.77 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.58 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.41 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.99 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.77 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.93 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.62 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.13 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.78 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.41 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.56 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.25 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.56 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.38 | MC |
| SRR1213692 | leaf | wt | 0.52 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.80 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.58 | MC |
| SRR6502088 | leaf | control | 0.86 | MC |
| SRR6502101 | leaf | control | 1.23 | MC |
| SRR5856927 | leaf | control | 0.39 | MC |
| SRR5856928 | leaf | control | 0.30 | MC |
| SRR5856929 | leaf | control | 0.28 | MC |
| SRR5856931 | leaf | salt | 0.38 | MC |
| SRR5856932 | leaf | salt | 0.36 | MC |
| SRR5856933 | leaf | control | 0.43 | MC |
| SRR5856936 | leaf | salt | 0.35 | MC |
| SRR5856937 | leaf | salt | 0.46 | MC |
| SRR5856938 | leaf | salt | 0.17 | MC |
| SRR8582890 | panicle | AM | 0.64 | MC |
| SRR8582891 | panicle | PM | 0.47 | MC |
| SRR8582893 | panicle | PM | 0.37 | MC |
| SRR5110431 | panicle | Dawn | 0.36 | MC |
| SRR5110432 | panicle | Dawn | 2.10 | MC |
| SRR4947496 | root | control | 1.01 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.17 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.57 | MC |
| SRR5110445 | panicle | Dusk | 0.61 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.06 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.29 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.24 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.83 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.97 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.46 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.87 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.68 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.44 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.26 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.58 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.54 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.43 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.39 | MC |
| SRR5126147 | root | "mock,1_day" | 1.08 | MC |
| SRR5126148 | root | "mock,1_day" | 1.14 | MC |
| SRR5126149 | root | "mock,1_day" | 0.40 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.93 | MC |
| SRR5126153 | root | "mock,7_days" | 0.78 | MC |
| SRR5126155 | root | "mock,7_days" | 0.76 | MC |
| SRR5126157 | root | "mock,7_days" | 1.36 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.19 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126165 | root | "mock,14_days" | 0.99 | MC |
| SRR5126169 | root | "mock,14_days" | 0.55 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.56 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.67 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.67 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR1213695 | root | wt | 0.32 | MC |
| SRR4947479 | root | control | 0.49 | MC |
| SRR4947482 | root | Al | 0.71 | MC |
| SRR4947483 | root | Al | 0.50 | MC |
| SRR4947490 | root | Al | 1.79 | MC |
| SRR4947492 | root | Al | 1.04 | MC |
| SRR4947493 | root | Al | 1.21 | MC |
| SRR4947498 | root | Al | 0.66 | MC |
| SRR4947499 | root | Al | 1.19 | MC |
| SRR4947500 | root | Al | 0.54 | MC |
| SRR4947501 | root | Al | 0.81 | MC |
| SRR4947502 | root | control | 0.60 | MC |
| SRR4947505 | root | control | 0.69 | MC |
| SRR4947506 | root | Al | 0.97 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.45 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.60 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.00 | MC |
| SRR6502094 | root | control | 1.02 | MC |
| SRR6502095 | root | control | 2.22 | MC |
| SRR6502096 | root | control | 1.79 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.09 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.08 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.92 | MC |
| SRR6502106 | root | control | 2.24 | MC |
| SRR6502107 | root | control | 2.09 | MC |
| SRR6502108 | root | control | 2.73 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.10 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.44 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.97 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.36 | MC |
| SRR6441554 | seedling | wild_type | 0.38 | MC |
| SRR6441555 | seedling | wild_type | 0.26 | MC |
| SRR2154086 | seedling | wt | 0.98 | MC |
| SRR2154082 | seedling | wt | 0.48 | MC |
| SRR2154083 | seedling | wt | 1.69 | MC |
| SRR2154085 | seedling | wt | 1.40 | MC |
| SRR2154087 | seedling | wt | 1.36 | MC |
| SRR3098741 | seedling | wt | 1.28 | MC |
| SRR3098742 | seedling | wt | 1.25 | MC |
| SRR3098743 | seedling | wt | 0.84 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.87 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.32 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.97 | MC |
| SRR1944583 | seedling | no_treatment | 0.94 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.73 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.64 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.85 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.76 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.44 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.54 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.54 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.61 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.79 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.73 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.46 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.44 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.96 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.98 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.45 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.57 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.68 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.99 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.68 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.28 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.38 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.45 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.73 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |