| SRR4457251 | 2nd_leaf | DAH4 | 0.55 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.55 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.55 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.24 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.97 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.64 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.82 | MC |
| SRR358796 | callus | wt | 2.39 | MC |
| SRR5560727 | caryopsis | wild_type | 1.85 | MC |
| SRR5560728 | caryopsis | wild_type | 2.06 | MC |
| SRR5560729 | caryopsis | wild_type | 2.43 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.00 | MC |
| SRR7265400 | coleoptile | 2dA | 2.68 | MC |
| SRR7265401 | coleoptile | 2dA | 2.66 | MC |
| SRR7265402 | coleoptile | 2dA | 1.66 | MC |
| SRR7265403 | coleoptile | 2dN | 2.32 | MC |
| SRR7265404 | coleoptile | 2dN | 3.09 | MC |
| SRR7265410 | coleoptile | 3dN | 0.84 | MC |
| SRR7265416 | coleoptile | 4dN | 0.85 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.73 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.95 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.94 | MC |
| SRR7265376 | embryo | 1hA | 0.74 | MC |
| SRR7265377 | embryo | 1hA | 2.31 | MC |
| SRR7265378 | embryo | 1hA | 0.98 | MC |
| SRR7265379 | embryo | 1hN | 0.86 | MC |
| SRR7265381 | embryo | 1hN | 1.35 | MC |
| SRR7265382 | embryo | 3hA | 1.16 | MC |
| SRR7265383 | embryo | 3hA | 0.81 | MC |
| SRR7265384 | embryo | 3hA | 1.20 | MC |
| SRR7265385 | embryo | 3hN | 0.76 | MC |
| SRR7265386 | embryo | 3hN | 0.92 | MC |
| SRR7265387 | embryo | 3hN | 0.92 | MC |
| SRR7265388 | embryo | 12hA | 3.79 | MC |
| SRR7265389 | embryo | 12hA | 4.25 | MC |
| SRR7265390 | embryo | 12hA | 2.85 | MC |
| SRR7265391 | embryo | 12hN | 3.67 | MC |
| SRR7265392 | embryo | 12hN | 4.01 | MC |
| SRR7265394 | embryo | 24hA | 2.40 | MC |
| SRR7265395 | embryo | 24hA | 3.76 | MC |
| SRR7265396 | embryo | 24hA | 2.95 | MC |
| SRR7265397 | embryo | 24hN | 3.23 | MC |
| SRR7265398 | embryo | 24hN | 4.16 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.67 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.74 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.60 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.42 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.71 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.83 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.97 | MC |
| SRR1213691 | flower | wt | 0.80 | MC |
| SRR8060836 | leaf | wild_type | 1.40 | MC |
| SRR8060837 | leaf | wild_type | 0.33 | MC |
| SRR8240818 | leaf | wild_type | 0.61 | MC |
| SRR8240819 | leaf | wild_type | 0.89 | MC |
| SRR8240820 | leaf | wild_type | 0.34 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.17 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.23 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.90 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.77 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.18 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.89 | MC |
| SRR504365 | leaf | wt | 2.79 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.95 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.88 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.92 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.53 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.11 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.51 | MC |
| SRR1213692 | leaf | wt | 0.79 | MC |
| SRR1213693 | leaf | wt | 0.50 | MC |
| SRR5856928 | leaf | control | 0.20 | MC |
| SRR5856929 | leaf | control | 0.27 | MC |
| SRR5856933 | leaf | control | 0.40 | MC |
| SRR5856934 | leaf | control | 0.59 | MC |
| SRR5856935 | leaf | control | 0.30 | MC |
| SRR5856938 | leaf | salt | 0.31 | MC |
| SRR6168973 | leaf | none (control) | 0.43 | MC |
| SRR6168974 | leaf | none (control) | 0.46 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.61 | MC |
| SRR8582891 | panicle | PM | 2.24 | MC |
| SRR8582892 | panicle | PM | 1.21 | MC |
| SRR8582893 | panicle | PM | 2.45 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.97 | MC |
| SRR5110445 | panicle | Dusk | 1.01 | MC |
| SRR5110446 | panicle | Dusk | 0.79 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.14 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.23 | MC |
| SRR1633182 | panicle | WT | 2.35 | MC |
| SRR1633185 | panicle | WT | 2.00 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.40 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.17 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.69 | MC |
| SRR5126147 | root | "mock,1_day" | 0.99 | MC |
| SRR5126148 | root | "mock,1_day" | 2.09 | MC |
| SRR5126149 | root | "mock,1_day" | 1.21 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.58 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.74 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.18 | MC |
| SRR5126153 | root | "mock,7_days" | 0.97 | MC |
| SRR5126155 | root | "mock,7_days" | 1.31 | MC |
| SRR5126157 | root | "mock,7_days" | 1.58 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.10 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.89 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.47 | MC |
| SRR5126165 | root | "mock,14_days" | 1.25 | MC |
| SRR5126167 | root | "mock,14_days" | 0.83 | MC |
| SRR5126169 | root | "mock,14_days" | 0.90 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.20 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.31 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.21 | MC |
| SRR1213694 | root | wt | 0.54 | MC |
| SRR1213695 | root | wt | 0.71 | MC |
| SRR4947479 | root | control | 0.89 | MC |
| SRR4947482 | root | Al | 1.41 | MC |
| SRR4947483 | root | Al | 0.64 | MC |
| SRR4947484 | root | Al | 1.35 | MC |
| SRR4947487 | root | control | 0.67 | MC |
| SRR4947490 | root | Al | 1.20 | MC |
| SRR4947497 | root | control | 2.05 | MC |
| SRR4947504 | root | control | 0.69 | MC |
| SRR4947505 | root | control | 1.39 | MC |
| SRR4947507 | root | Al | 1.55 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.12 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.81 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.24 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.85 | MC |
| SRR6502107 | root | control | 0.75 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.99 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.24 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.94 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.20 | MC |
| SRR6441554 | seedling | wild_type | 0.44 | MC |
| SRR6441555 | seedling | wild_type | 0.50 | MC |
| SRR2154086 | seedling | wt | 1.63 | MC |
| SRR2154082 | seedling | wt | 0.72 | MC |
| SRR2154084 | seedling | wt | 2.07 | MC |
| SRR2154085 | seedling | wt | 0.79 | MC |
| SRR2154087 | seedling | wt | 1.30 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.67 | MC |
| SRR3098743 | seedling | wt | 0.35 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.75 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.84 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.83 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.69 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.04 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.05 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.05 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.28 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.77 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.58 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.81 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.21 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.88 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.86 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.10 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.11 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.05 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.53 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.60 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.49 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.78 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |