| SRR5560727 | caryopsis | wild_type | 0.35 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.79 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.91 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.93 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.32 | MC |
| SRR976168 | flag_leaf | wild_type | 0.49 | MC |
| SRR8060835 | leaf | wild_type | 2.81 | MC |
| SRR8060836 | leaf | wild_type | 0.52 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.81 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.37 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.35 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.85 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.80 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.15 | MC |
| SRR8582888 | panicle | AM | 0.46 | MC |
| SRR8582889 | panicle | AM | 1.06 | MC |
| SRR8582890 | panicle | AM | 2.11 | MC |
| SRR8582891 | panicle | PM | 2.71 | MC |
| SRR8582893 | panicle | PM | 1.35 | MC |
| SRR5110429 | panicle | Dawn | 1.06 | MC |
| SRR5110430 | panicle | Dawn | 1.55 | MC |
| SRR5110431 | panicle | Dawn | 0.89 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.73 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.48 | MC |
| SRR5110445 | panicle | Dusk | 1.54 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.60 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.21 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.14 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.57 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.62 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.38 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.63 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.58 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.40 | MC |
| SRR5126148 | root | "mock,1_day" | 0.56 | MC |
| SRR5126149 | root | "mock,1_day" | 0.58 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.68 | MC |
| SRR5126155 | root | "mock,7_days" | 0.59 | MC |
| SRR5126157 | root | "mock,7_days" | 0.91 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.31 | MC |
| SRR5126169 | root | "mock,14_days" | 0.44 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.01 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.33 | MC |
| SRR4947488 | root | control | 0.89 | MC |
| SRR6441554 | seedling | wild_type | 2.59 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.72 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.50 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.42 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.83 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.62 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.06 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.86 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.76 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.49 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.36 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.19 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.17 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.40 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.59 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.37 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.29 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.16 | MC |