| SRR4457249 | 2nd_leaf | DAH4 | 1.99 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.52 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.56 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.97 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.17 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.87 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.13 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.08 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.52 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.71 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.69 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.63 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.09 | MC |
| SRR358797 | callus | wt | 0.85 | MC |
| SRR358798 | callus | wt | 2.24 | MC |
| SRR5560727 | caryopsis | wild_type | 0.44 | MC |
| SRR5560728 | caryopsis | wild_type | 0.37 | MC |
| SRR5560729 | caryopsis | wild_type | 0.75 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265376 | embryo | 1hA | 0.39 | MC |
| SRR7265380 | embryo | 1hN | 0.50 | MC |
| SRR7265381 | embryo | 1hN | 0.23 | MC |
| SRR7265382 | embryo | 3hA | 0.72 | MC |
| SRR7265383 | embryo | 3hA | 0.56 | MC |
| SRR7265384 | embryo | 3hA | 0.57 | MC |
| SRR7265385 | embryo | 3hN | 0.49 | MC |
| SRR7265386 | embryo | 3hN | 0.36 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 4.66 | MC |
| SRR7265389 | embryo | 12hA | 3.88 | MC |
| SRR7265391 | embryo | 12hN | 3.38 | MC |
| SRR7265392 | embryo | 12hN | 2.96 | MC |
| SRR7265393 | embryo | 12hN | 3.05 | MC |
| SRR7265397 | embryo | 24hN | 4.41 | MC |
| SRR7265398 | embryo | 24hN | 4.46 | MC |
| SRR7265399 | embryo | 24hN | 4.35 | MC |
| SRR2338867 | endosprem | control | 0.91 | MC |
| SRR2338868 | endosprem | high_temperature | 1.90 | MC |
| SRR2338869 | endosprem | high_temperature | 1.12 | MC |
| SRR976168 | flag_leaf | wild_type | 0.80 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.88 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.05 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.14 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.47 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.91 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.12 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.98 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.46 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.95 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.02 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.59 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.27 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.98 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.40 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.38 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.70 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.41 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.83 | MC |
| SRR1213691 | flower | wt | 2.77 | MC |
| SRR8060835 | leaf | wild_type | 0.59 | MC |
| SRR8060836 | leaf | wild_type | 0.85 | MC |
| SRR8060837 | leaf | wild_type | 0.34 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.32 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.21 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.34 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.36 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.39 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.88 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.42 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.79 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.74 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.66 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.53 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.86 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.57 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.99 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.30 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.65 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.86 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.56 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.16 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.93 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.74 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.79 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.31 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.25 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.93 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.43 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.82 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.86 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.79 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.70 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.92 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.32 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.43 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.73 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.92 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.32 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.43 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.73 | MC |
| SRR1761528 | leaf | drought | 0.92 | MC |
| SRR1761529 | leaf | drought | 2.32 | MC |
| SRR1761530 | leaf | control | 1.43 | MC |
| SRR1761531 | leaf | control | 1.73 | MC |
| SRR504365 | leaf | wt | 1.62 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.60 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.72 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.01 | MC |
| SRR6417967 | leaf | H2O_control | 1.96 | MC |
| SRR6417968 | leaf | H2O_control | 1.46 | MC |
| SRR6417969 | leaf | H2O_control | 1.91 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.93 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.64 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.15 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.99 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.05 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.04 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.97 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.17 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.30 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.83 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.08 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.02 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.19 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.23 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.49 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.66 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.46 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR1213692 | leaf | wt | 2.58 | MC |
| SRR1213693 | leaf | wt | 2.17 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.59 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.40 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.72 | MC |
| SRR6502088 | leaf | control | 1.18 | MC |
| SRR6502089 | leaf | control | 1.11 | MC |
| SRR6502090 | leaf | control | 1.55 | MC |
| SRR6168974 | leaf | none (control) | 2.80 | MC |
| SRR6168975 | leaf | none (control) | 1.36 | MC |
| SRR8582888 | panicle | AM | 0.80 | MC |
| SRR8582889 | panicle | AM | 0.98 | MC |
| SRR8582890 | panicle | AM | 0.85 | MC |
| SRR8582891 | panicle | PM | 0.82 | MC |
| SRR8582892 | panicle | PM | 0.65 | MC |
| SRR8582893 | panicle | PM | 1.08 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.76 | MC |
| SRR1633182 | panicle | WT | 4.53 | MC |
| SRR1633185 | panicle | WT | 5.44 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.87 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.74 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.13 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.21 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.97 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.58 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.14 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.27 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.49 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.51 | MC |
| SRR1213694 | root | wt | 1.27 | MC |
| SRR1213695 | root | wt | 2.23 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.79 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.18 | MC |
| SRR6502094 | root | control | 4.31 | MC |
| SRR6441554 | seedling | wild_type | 1.15 | MC |
| SRR6441555 | seedling | wild_type | 1.61 | MC |
| SRR3098741 | seedling | wt | 0.73 | MC |
| SRR3098742 | seedling | wt | 1.10 | MC |
| SRR3098743 | seedling | wt | 1.00 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.01 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.68 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.93 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.31 | MC |
| SRR1944583 | seedling | no_treatment | 3.68 | MC |
| SRR358792 | seedling | wt | 1.27 | MC |
| SRR358793 | seedling | wt | 2.95 | MC |
| SRR358794 | seedling | wt | 3.19 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.63 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.90 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.19 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.49 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.10 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.55 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.20 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.74 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.96 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.30 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.57 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.91 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.23 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.59 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.74 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.68 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.12 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.65 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.68 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.54 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.86 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.86 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.88 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 14.78 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.02 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.77 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.71 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.03 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.27 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.87 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.32 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.08 | MC |