| SRR4457250 | 2nd_leaf | DAH4 | 0.45 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.63 | MC |
| SRR3745125 | anther | wt | 0.73 | MC |
| SRR6320473 | carpel | wt | 2.16 | MC |
| SRR7265400 | coleoptile | 2dA | 0.70 | MC |
| SRR7265401 | coleoptile | 2dA | 0.59 | MC |
| SRR7265402 | coleoptile | 2dA | 0.43 | MC |
| SRR7265403 | coleoptile | 2dN | 1.37 | MC |
| SRR7265404 | coleoptile | 2dN | 1.35 | MC |
| SRR7265405 | coleoptile | 2dN | 1.11 | MC |
| SRR7265407 | coleoptile | 3dA | 0.46 | MC |
| SRR7265409 | coleoptile | 3dN | 0.43 | MC |
| SRR7265410 | coleoptile | 3dN | 1.28 | MC |
| SRR7265413 | coleoptile | 4dA | 0.81 | MC |
| SRR7265415 | coleoptile | 4dN | 1.04 | MC |
| SRR7265417 | coleoptile | 4dN | 0.57 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.53 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.33 | MC |
| SRR7265376 | embryo | 1hA | 2.86 | MC |
| SRR7265377 | embryo | 1hA | 2.79 | MC |
| SRR7265378 | embryo | 1hA | 2.40 | MC |
| SRR7265380 | embryo | 1hN | 2.21 | MC |
| SRR7265381 | embryo | 1hN | 2.62 | MC |
| SRR7265382 | embryo | 3hA | 3.41 | MC |
| SRR7265383 | embryo | 3hA | 3.04 | MC |
| SRR7265385 | embryo | 3hN | 3.46 | MC |
| SRR7265386 | embryo | 3hN | 2.66 | MC |
| SRR7265388 | embryo | 12hA | 2.35 | MC |
| SRR7265389 | embryo | 12hA | 1.16 | MC |
| SRR7265390 | embryo | 12hA | 1.53 | MC |
| SRR7265391 | embryo | 12hN | 1.05 | MC |
| SRR7265392 | embryo | 12hN | 1.75 | MC |
| SRR7265393 | embryo | 12hN | 1.76 | MC |
| SRR7265394 | embryo | 24hA | 0.52 | MC |
| SRR7265395 | embryo | 24hA | 2.31 | MC |
| SRR7265396 | embryo | 24hA | 1.19 | MC |
| SRR7265397 | embryo | 24hN | 1.38 | MC |
| SRR7265398 | embryo | 24hN | 1.29 | MC |
| SRR7265399 | embryo | 24hN | 1.49 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.44 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.68 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.45 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.88 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.37 | MC |
| SRR8060835 | leaf | wild_type | 1.25 | MC |
| SRR8060836 | leaf | wild_type | 1.46 | MC |
| SRR8060837 | leaf | wild_type | 0.81 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.61 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.41 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.69 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.83 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.04 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.79 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.76 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.84 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.66 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.40 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.17 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.65 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.65 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.90 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.22 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.87 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.72 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.56 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.49 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.49 | MC |
| SRR1761528 | leaf | drought | 0.49 | MC |
| SRR504365 | leaf | wt | 0.63 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.62 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.88 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.74 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.87 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.89 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.16 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.42 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.98 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.50 | MC |
| SRR1213692 | leaf | wt | 0.29 | MC |
| SRR1213693 | leaf | wt | 1.16 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.13 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.58 | MC |
| SRR6502100 | leaf | control | 2.70 | MC |
| SRR6168973 | leaf | none (control) | 0.50 | MC |
| SRR6168975 | leaf | none (control) | 0.50 | MC |
| SRR6168981 | leaf | none (control) | 0.47 | MC |
| SRR8582888 | panicle | AM | 0.89 | MC |
| SRR8582889 | panicle | AM | 0.43 | MC |
| SRR8582890 | panicle | AM | 0.55 | MC |
| SRR8582891 | panicle | PM | 0.91 | MC |
| SRR1213695 | root | wt | 1.24 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.88 | MC |
| SRR6502106 | root | control | 2.06 | MC |
| SRR6502107 | root | control | 2.51 | MC |
| SRR6441554 | seedling | wild_type | 0.63 | MC |
| SRR2154086 | seedling | wt | 0.48 | MC |
| SRR2154083 | seedling | wt | 1.11 | MC |
| SRR2154087 | seedling | wt | 0.47 | MC |
| SRR3098741 | seedling | wt | 0.86 | MC |
| SRR3098742 | seedling | wt | 0.42 | MC |
| SRR3098743 | seedling | wt | 0.66 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.57 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.70 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.14 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.41 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.35 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.27 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.51 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.87 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |