| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR358797 | callus | wt | 0.97 | MC |
| SRR358798 | callus | wt | 1.22 | MC |
| SRR6320473 | carpel | wt | 3.10 | MC |
| SRR6320498 | carpel | wt | 2.98 | MC |
| SRR5560727 | caryopsis | wild_type | 0.69 | MC |
| SRR5560728 | caryopsis | wild_type | 0.56 | MC |
| SRR5560729 | caryopsis | wild_type | 0.62 | MC |
| SRR4947495 | root | control | 0.63 | MC |
| SRR7265401 | coleoptile | 2dA | 3.36 | MC |
| SRR7265402 | coleoptile | 2dA | 3.33 | MC |
| SRR7265406 | coleoptile | 3dA | 1.50 | MC |
| SRR7265407 | coleoptile | 3dA | 1.50 | MC |
| SRR7265408 | coleoptile | 3dA | 1.05 | MC |
| SRR7265410 | coleoptile | 3dN | 3.64 | MC |
| SRR7265412 | coleoptile | 4dA | 1.78 | MC |
| SRR7265414 | coleoptile | 4dA | 2.62 | MC |
| SRR7265415 | coleoptile | 4dN | 4.64 | MC |
| SRR7265416 | coleoptile | 4dN | 4.18 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.48 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.74 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.78 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.37 | MC |
| SRR7265376 | embryo | 1hA | 1.61 | MC |
| SRR7265377 | embryo | 1hA | 1.72 | MC |
| SRR7265378 | embryo | 1hA | 2.30 | MC |
| SRR7265379 | embryo | 1hN | 2.70 | MC |
| SRR7265380 | embryo | 1hN | 1.90 | MC |
| SRR7265381 | embryo | 1hN | 2.65 | MC |
| SRR7265382 | embryo | 3hA | 1.12 | MC |
| SRR7265383 | embryo | 3hA | 1.13 | MC |
| SRR7265384 | embryo | 3hA | 1.23 | MC |
| SRR7265385 | embryo | 3hN | 1.41 | MC |
| SRR7265386 | embryo | 3hN | 0.92 | MC |
| SRR7265387 | embryo | 3hN | 0.85 | MC |
| SRR2338866 | endosprem | control | 1.21 | MC |
| SRR2338867 | endosprem | control | 1.10 | MC |
| SRR2338868 | endosprem | high_temperature | 1.54 | MC |
| SRR2338869 | endosprem | high_temperature | 2.31 | MC |
| SRR976168 | flag_leaf | wild_type | 0.32 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.43 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.32 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.40 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.46 | MC |
| SRR1213691 | flower | wt | 0.30 | MC |
| SRR8060837 | leaf | wild_type | 0.30 | MC |
| SRR8240819 | leaf | wild_type | 0.25 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.91 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.53 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.56 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.61 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.89 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.71 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.48 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.40 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.53 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.62 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.43 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.47 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.37 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.42 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.62 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.60 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.44 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.45 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.05 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.84 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.56 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.56 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.65 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.61 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.55 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.66 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.61 | MC |
| SRR1761528 | leaf | drought | 0.55 | MC |
| SRR1761529 | leaf | drought | 0.65 | MC |
| SRR1761531 | leaf | control | 0.61 | MC |
| SRR504365 | leaf | wt | 0.32 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.48 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.46 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR1213692 | leaf | wt | 0.45 | MC |
| SRR1213693 | leaf | wt | 0.43 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.33 | MC |
| SRR6502088 | leaf | control | 0.43 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR5856927 | leaf | control | 0.25 | MC |
| SRR5856928 | leaf | control | 0.33 | MC |
| SRR5856929 | leaf | control | 0.18 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.99 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.43 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.94 | MC |
| SRR6168975 | leaf | none (control) | 0.52 | MC |
| SRR5110429 | panicle | Dawn | 0.39 | MC |
| SRR5110431 | panicle | Dawn | 0.51 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.96 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.44 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.92 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.38 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.45 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.47 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.60 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.59 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.68 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.41 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.62 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.22 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.37 | MC |
| SRR5126147 | root | "mock,1_day" | 0.31 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.61 | MC |
| SRR5126153 | root | "mock,7_days" | 0.28 | MC |
| SRR5126157 | root | "mock,7_days" | 0.63 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126165 | root | "mock,14_days" | 0.46 | MC |
| SRR5126167 | root | "mock,14_days" | 0.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR1213695 | root | wt | 0.39 | MC |
| SRR4947478 | root | control | 0.69 | MC |
| SRR4947479 | root | control | 0.54 | MC |
| SRR4947480 | root | control | 0.91 | MC |
| SRR4947481 | root | control | 0.71 | MC |
| SRR4947482 | root | Al | 0.41 | MC |
| SRR4947485 | root | Al | 0.75 | MC |
| SRR4947487 | root | control | 0.48 | MC |
| SRR4947489 | root | control | 0.58 | MC |
| SRR4947491 | root | Al | 1.13 | MC |
| SRR4947493 | root | Al | 0.55 | MC |
| SRR4947494 | root | control | 0.48 | MC |
| SRR4947497 | root | control | 0.64 | MC |
| SRR4947498 | root | Al | 0.79 | MC |
| SRR4947499 | root | Al | 0.77 | MC |
| SRR4947501 | root | Al | 1.62 | MC |
| SRR4947502 | root | control | 1.68 | MC |
| SRR4947503 | root | control | 1.11 | MC |
| SRR4947504 | root | control | 1.21 | MC |
| SRR4947505 | root | control | 1.14 | MC |
| SRR4947506 | root | Al | 0.90 | MC |
| SRR4947507 | root | Al | 0.95 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.43 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.39 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.36 | MC |
| SRR6502107 | root | control | 0.33 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR2154086 | seedling | wt | 0.62 | MC |
| SRR2154082 | seedling | wt | 1.58 | MC |
| SRR2154083 | seedling | wt | 0.76 | MC |
| SRR2154084 | seedling | wt | 1.45 | MC |
| SRR3098741 | seedling | wt | 1.01 | MC |
| SRR3098742 | seedling | wt | 0.75 | MC |
| SRR3098743 | seedling | wt | 0.54 | MC |
| SRR358791 | seedling | wt | 0.63 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.70 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.96 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.40 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.32 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.10 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.59 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.64 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.64 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.69 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.76 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.43 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.00 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.39 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.40 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.52 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.72 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.76 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.88 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |