| SRR3745125 | anther | wt | 1.51 | MC |
| SRR3745126 | anther | wt | 2.06 | MC |
| SRR3745127 | anther | wt | 1.66 | MC |
| SRR5560727 | caryopsis | wild_type | 1.75 | MC |
| SRR5560728 | caryopsis | wild_type | 3.01 | MC |
| SRR5560729 | caryopsis | wild_type | 3.44 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.08 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.67 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.83 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.47 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.09 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.74 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.52 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.85 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.99 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.16 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.19 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.70 | MC |
| SRR2338866 | endosprem | control | 3.64 | MC |
| SRR2338867 | endosprem | control | 1.81 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.27 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.81 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.81 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.74 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.82 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.88 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.34 | MC |
| SRR8060835 | leaf | wild_type | 1.39 | MC |
| SRR8060836 | leaf | wild_type | 1.89 | MC |
| SRR8060837 | leaf | wild_type | 2.39 | MC |
| SRR8240826 | leaf | wild_type | 0.26 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.22 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.97 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.67 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.58 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.32 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.74 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.61 | MC |
| SRR6417967 | leaf | H2O_control | 3.70 | MC |
| SRR6417968 | leaf | H2O_control | 2.00 | MC |
| SRR6417969 | leaf | H2O_control | 1.42 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.28 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.64 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.79 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.94 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.43 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.72 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.38 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.22 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.84 | MC |
| SRR5856927 | leaf | control | 1.13 | MC |
| SRR5856928 | leaf | control | 1.56 | MC |
| SRR5856929 | leaf | control | 1.54 | MC |
| SRR5856930 | leaf | salt | 0.33 | MC |
| SRR5856931 | leaf | salt | 0.56 | MC |
| SRR5856932 | leaf | salt | 0.93 | MC |
| SRR5856933 | leaf | control | 0.52 | MC |
| SRR5856934 | leaf | control | 0.74 | MC |
| SRR5856935 | leaf | control | 0.70 | MC |
| SRR5856936 | leaf | salt | 0.34 | MC |
| SRR5856937 | leaf | salt | 0.19 | MC |
| SRR5856938 | leaf | salt | 0.60 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.71 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.91 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.54 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.29 | MC |
| SRR6168973 | leaf | none (control) | 2.13 | MC |
| SRR6168974 | leaf | none (control) | 1.90 | MC |
| SRR6168975 | leaf | none (control) | 3.05 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.56 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.38 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.62 | MC |
| SRR6168979 | leaf | none (control) | 0.37 | MC |
| SRR6168980 | leaf | none (control) | 0.60 | MC |
| SRR6168981 | leaf | none (control) | 1.06 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.94 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.94 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.69 | MC |
| SRR8582889 | panicle | AM | 1.31 | MC |
| SRR4947496 | root | control | 4.30 | MC |
| SRR5126148 | root | "mock,1_day" | 2.32 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.98 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.51 | MC |
| SRR4947482 | root | Al | 2.80 | MC |
| SRR4947484 | root | Al | 4.98 | MC |
| SRR4947487 | root | control | 3.55 | MC |
| SRR4947488 | root | control | 4.83 | MC |
| SRR4947490 | root | Al | 4.23 | MC |
| SRR4947491 | root | Al | 3.53 | MC |
| SRR4947492 | root | Al | 5.42 | MC |
| SRR4947493 | root | Al | 3.67 | MC |
| SRR4947494 | root | control | 4.05 | MC |
| SRR4947497 | root | control | 4.80 | MC |
| SRR4947498 | root | Al | 4.84 | MC |
| SRR4947499 | root | Al | 4.88 | MC |
| SRR4947501 | root | Al | 5.94 | MC |
| SRR4947507 | root | Al | 3.95 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.96 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.56 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.10 | MC |
| SRR6441554 | seedling | wild_type | 2.31 | MC |
| SRR6441555 | seedling | wild_type | 2.30 | MC |
| SRR2154086 | seedling | wt | 3.66 | MC |
| SRR2154085 | seedling | wt | 1.12 | MC |
| SRR2154087 | seedling | wt | 1.69 | MC |
| SRR3098741 | seedling | wt | 1.91 | MC |
| SRR3098742 | seedling | wt | 2.13 | MC |
| SRR3098743 | seedling | wt | 1.53 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.79 | MC |
| SRR2857720 | seedling | drought_stress_1h | 4.03 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.93 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.28 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.19 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.69 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.29 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.87 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.26 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.24 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.16 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.66 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.10 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.62 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.09 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.82 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.61 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.70 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.85 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.27 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.04 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.48 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.47 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 8.08 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 7.13 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.43 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.72 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.59 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.68 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 8.99 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.39 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.69 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.37 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.89 | MC |