| SRR4457249 | 2nd_leaf | DAH4 | 0.67 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.42 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.46 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.90 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.69 | MC |
| SRR6320473 | carpel | wt | 1.47 | MC |
| SRR5560727 | caryopsis | wild_type | 2.82 | MC |
| SRR5560728 | caryopsis | wild_type | 2.11 | MC |
| SRR5560729 | caryopsis | wild_type | 2.03 | MC |
| SRR4947495 | root | control | 3.56 | MC |
| SRR7265400 | coleoptile | 2dA | 2.12 | MC |
| SRR7265403 | coleoptile | 2dN | 1.84 | MC |
| SRR7265404 | coleoptile | 2dN | 0.84 | MC |
| SRR7265405 | coleoptile | 2dN | 0.83 | MC |
| SRR7265413 | coleoptile | 4dA | 1.56 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.54 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.80 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.69 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.88 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.86 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.82 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.80 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.46 | MC |
| SRR7265376 | embryo | 1hA | 0.91 | MC |
| SRR7265377 | embryo | 1hA | 2.41 | MC |
| SRR7265379 | embryo | 1hN | 0.74 | MC |
| SRR7265380 | embryo | 1hN | 0.59 | MC |
| SRR7265381 | embryo | 1hN | 1.62 | MC |
| SRR7265382 | embryo | 3hA | 0.69 | MC |
| SRR7265384 | embryo | 3hA | 0.57 | MC |
| SRR7265385 | embryo | 3hN | 1.95 | MC |
| SRR7265386 | embryo | 3hN | 0.95 | MC |
| SRR7265387 | embryo | 3hN | 1.56 | MC |
| SRR7265390 | embryo | 12hA | 0.72 | MC |
| SRR7265392 | embryo | 12hN | 0.96 | MC |
| SRR7265395 | embryo | 24hA | 1.74 | MC |
| SRR2338867 | endosprem | control | 1.21 | MC |
| SRR2338868 | endosprem | high_temperature | 2.45 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.53 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.67 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.78 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.30 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.52 | MC |
| SRR1213691 | flower | wt | 3.59 | MC |
| SRR8060837 | leaf | wild_type | 0.26 | MC |
| SRR8240824 | leaf | wild_type | 0.46 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.01 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.97 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.72 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.38 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.78 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.71 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.81 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.60 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.26 | MC |
| SRR1213692 | leaf | wt | 0.41 | MC |
| SRR1213693 | leaf | wt | 0.28 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR5856932 | leaf | salt | 1.75 | MC |
| SRR6168973 | leaf | none (control) | 0.87 | MC |
| SRR6168974 | leaf | none (control) | 1.80 | MC |
| SRR6168975 | leaf | none (control) | 1.93 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.98 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.09 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.67 | MC |
| SRR5110429 | panicle | Dawn | 0.84 | MC |
| SRR5110430 | panicle | Dawn | 1.02 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.61 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.82 | MC |
| SRR5110445 | panicle | Dusk | 0.96 | MC |
| SRR5110446 | panicle | Dusk | 1.72 | MC |
| SRR5110447 | panicle | Dusk | 1.37 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.86 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.78 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.95 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.85 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.87 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.58 | MC |
| SRR1633182 | panicle | WT | 0.90 | MC |
| SRR1633185 | panicle | WT | 1.59 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.83 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.95 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.85 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.02 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.22 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.83 | MC |
| SRR5126147 | root | "mock,1_day" | 1.09 | MC |
| SRR5126148 | root | "mock,1_day" | 2.23 | MC |
| SRR5126149 | root | "mock,1_day" | 3.98 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.39 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.07 | MC |
| SRR5126153 | root | "mock,7_days" | 3.68 | MC |
| SRR5126157 | root | "mock,7_days" | 3.15 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.39 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.32 | MC |
| SRR5126165 | root | "mock,14_days" | 4.50 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.33 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.38 | MC |
| SRR1213694 | root | wt | 2.42 | MC |
| SRR1213695 | root | wt | 0.31 | MC |
| SRR4947479 | root | control | 3.28 | MC |
| SRR4947482 | root | Al | 3.18 | MC |
| SRR4947483 | root | Al | 3.78 | MC |
| SRR4947487 | root | control | 1.61 | MC |
| SRR4947490 | root | Al | 2.60 | MC |
| SRR4947491 | root | Al | 2.30 | MC |
| SRR4947494 | root | control | 1.99 | MC |
| SRR4947499 | root | Al | 4.76 | MC |
| SRR4947502 | root | control | 2.25 | MC |
| SRR4947503 | root | control | 2.12 | MC |
| SRR4947506 | root | Al | 3.25 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.68 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.95 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.09 | MC |
| SRR6502107 | root | control | 2.81 | MC |
| SRR6502108 | root | control | 4.08 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.18 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.15 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.24 | MC |
| SRR6441554 | seedling | wild_type | 0.31 | MC |
| SRR6441555 | seedling | wild_type | 0.74 | MC |
| SRR2154086 | seedling | wt | 3.90 | MC |
| SRR2154082 | seedling | wt | 1.15 | MC |
| SRR2154083 | seedling | wt | 1.22 | MC |
| SRR2154084 | seedling | wt | 3.05 | MC |
| SRR2154085 | seedling | wt | 3.30 | MC |
| SRR2154087 | seedling | wt | 2.87 | MC |
| SRR3098741 | seedling | wt | 1.26 | MC |
| SRR3098742 | seedling | wt | 1.91 | MC |
| SRR3098743 | seedling | wt | 1.91 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.95 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.53 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.27 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.42 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.53 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.26 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.37 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.44 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.64 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.60 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.63 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.83 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.92 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.75 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.82 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.62 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.81 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.85 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.63 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.31 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.08 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.14 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.55 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.37 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.76 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.55 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.07 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.73 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.37 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.34 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.84 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.53 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.34 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.63 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.88 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.70 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.96 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.42 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.42 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.47 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |