| SRR4457250 | 2nd_leaf | DAH4 | 0.60 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.25 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.66 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.54 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.71 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.68 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.51 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.74 | MC |
| SRR5560727 | caryopsis | wild_type | 0.34 | MC |
| SRR5560728 | caryopsis | wild_type | 0.33 | MC |
| SRR5560729 | caryopsis | wild_type | 0.27 | MC |
| SRR7265400 | coleoptile | 2dA | 0.62 | MC |
| SRR7265406 | coleoptile | 3dA | 0.44 | MC |
| SRR7265407 | coleoptile | 3dA | 0.25 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.26 | MC |
| SRR7265392 | embryo | 12hN | 0.58 | MC |
| SRR7265393 | embryo | 12hN | 0.45 | MC |
| SRR7265394 | embryo | 24hA | 1.44 | MC |
| SRR7265395 | embryo | 24hA | 2.61 | MC |
| SRR7265396 | embryo | 24hA | 1.72 | MC |
| SRR976168 | flag_leaf | wild_type | 0.59 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.34 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.93 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.98 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.45 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.25 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.36 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.81 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.35 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.79 | MC |
| SRR8240826 | leaf | wild_type | 0.28 | MC |
| SRR8240818 | leaf | wild_type | 0.29 | MC |
| SRR8240819 | leaf | wild_type | 0.46 | MC |
| SRR8240820 | leaf | wild_type | 0.30 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.69 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.68 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.29 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.15 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.66 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.27 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.77 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.03 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.80 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.74 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.23 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.80 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.60 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.94 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.85 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.73 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.40 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.51 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.02 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.67 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.64 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.03 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.97 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.32 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.03 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.44 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.14 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.34 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.44 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.96 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.96 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.96 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.96 | MC |
| SRR1761530 | leaf | control | 0.96 | MC |
| SRR1761531 | leaf | control | 0.96 | MC |
| SRR504365 | leaf | wt | 0.27 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.08 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.51 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.97 | MC |
| SRR6417967 | leaf | H2O_control | 0.46 | MC |
| SRR6417968 | leaf | H2O_control | 0.75 | MC |
| SRR6417969 | leaf | H2O_control | 1.75 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.58 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.48 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.59 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.28 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.50 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.30 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR1213692 | leaf | wt | 0.38 | MC |
| SRR1213693 | leaf | wt | 0.62 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.37 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR6502088 | leaf | control | 0.68 | MC |
| SRR6502089 | leaf | control | 0.51 | MC |
| SRR6502090 | leaf | control | 0.44 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.55 | MC |
| SRR6502100 | leaf | control | 0.50 | MC |
| SRR6502101 | leaf | control | 0.75 | MC |
| SRR6502102 | leaf | control | 1.12 | MC |
| SRR5856930 | leaf | salt | 0.17 | MC |
| SRR5856938 | leaf | salt | 0.17 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 6.11 | MC |
| SRR6168979 | leaf | none (control) | 1.36 | MC |
| SRR6168980 | leaf | none (control) | 0.37 | MC |
| SRR6168981 | leaf | none (control) | 0.65 | MC |
| SRR8582891 | panicle | PM | 2.80 | MC |
| SRR8582893 | panicle | PM | 3.54 | MC |
| SRR5110429 | panicle | Dawn | 0.38 | MC |
| SRR4947496 | root | control | 3.45 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.81 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.58 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.86 | MC |
| SRR1633182 | panicle | WT | 0.71 | MC |
| SRR1633185 | panicle | WT | 0.79 | MC |
| SRR5126148 | root | "mock,1_day" | 0.35 | MC |
| SRR5126153 | root | "mock,7_days" | 0.31 | MC |
| SRR5126155 | root | "mock,7_days" | 0.58 | MC |
| SRR5126167 | root | "mock,14_days" | 0.33 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR1213695 | root | wt | 0.43 | MC |
| SRR4947480 | root | control | 1.95 | MC |
| SRR4947481 | root | control | 3.31 | MC |
| SRR4947484 | root | Al | 1.31 | MC |
| SRR4947485 | root | Al | 2.89 | MC |
| SRR4947488 | root | control | 3.21 | MC |
| SRR4947489 | root | control | 3.44 | MC |
| SRR4947492 | root | Al | 1.47 | MC |
| SRR4947493 | root | Al | 2.26 | MC |
| SRR4947497 | root | control | 3.25 | MC |
| SRR4947500 | root | Al | 2.37 | MC |
| SRR4947501 | root | Al | 2.94 | MC |
| SRR4947504 | root | control | 2.52 | MC |
| SRR4947505 | root | control | 4.20 | MC |
| SRR4947508 | root | Al | 1.83 | MC |
| SRR4947509 | root | Al | 2.47 | MC |
| SRR6502094 | root | control | 0.52 | MC |
| SRR6502095 | root | control | 0.51 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502107 | root | control | 0.44 | MC |
| SRR6441555 | seedling | wild_type | 0.44 | MC |
| SRR2154086 | seedling | wt | 0.90 | MC |
| SRR2154085 | seedling | wt | 0.36 | MC |
| SRR2154087 | seedling | wt | 0.64 | MC |
| SRR3098741 | seedling | wt | 0.33 | MC |
| SRR3098742 | seedling | wt | 0.41 | MC |
| SRR3098743 | seedling | wt | 0.63 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.49 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.55 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.37 | MC |
| SRR1944583 | seedling | no_treatment | 0.69 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.03 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.82 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.79 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.98 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.85 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.60 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.59 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.64 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.42 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.83 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.59 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.47 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.08 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.00 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.45 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.46 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.08 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.41 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.09 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.13 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.29 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.60 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.58 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |