| SRR4457256 | 2nd_leaf | DAH20 | 3.49 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.15 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.25 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.78 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.56 | MC |
| SRR3745126 | anther | wt | 2.42 | MC |
| SRR3745127 | anther | wt | 3.16 | MC |
| SRR5560727 | caryopsis | wild_type | 3.97 | MC |
| SRR5560728 | caryopsis | wild_type | 4.16 | MC |
| SRR5560729 | caryopsis | wild_type | 4.95 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.90 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.19 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.67 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.63 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.63 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.29 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.91 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.34 | MC |
| SRR7265389 | embryo | 12hA | 2.49 | MC |
| SRR7265394 | embryo | 24hA | 3.62 | MC |
| SRR2338867 | endosprem | control | 1.10 | MC |
| SRR2338869 | endosprem | high_temperature | 1.13 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.93 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.25 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.49 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.19 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.07 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.20 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.29 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.18 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.58 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.26 | MC |
| SRR1213691 | flower | wt | 0.93 | MC |
| SRR8060835 | leaf | wild_type | 0.67 | MC |
| SRR8060836 | leaf | wild_type | 0.47 | MC |
| SRR8060837 | leaf | wild_type | 1.71 | MC |
| SRR8240824 | leaf | wild_type | 1.53 | MC |
| SRR8240819 | leaf | wild_type | 0.65 | MC |
| SRR8240820 | leaf | wild_type | 1.04 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.94 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.71 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.43 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.59 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.31 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.17 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.22 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.77 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.85 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.60 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.90 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.37 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.09 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.02 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.41 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.38 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.28 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.07 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.07 | MC |
| SRR1761531 | leaf | control | 2.07 | MC |
| SRR504365 | leaf | wt | 2.45 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.95 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.76 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.72 | MC |
| SRR6417967 | leaf | H2O_control | 1.61 | MC |
| SRR6417968 | leaf | H2O_control | 1.72 | MC |
| SRR6417969 | leaf | H2O_control | 1.22 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.79 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.68 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.24 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.73 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.50 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.94 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.61 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.32 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.86 | MC |
| SRR1213692 | leaf | wt | 2.44 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.66 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.09 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.40 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.81 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.07 | MC |
| SRR6502102 | leaf | control | 1.43 | MC |
| SRR5856927 | leaf | control | 1.55 | MC |
| SRR5856928 | leaf | control | 2.11 | MC |
| SRR5856929 | leaf | control | 1.64 | MC |
| SRR5856933 | leaf | control | 1.83 | MC |
| SRR5856934 | leaf | control | 1.57 | MC |
| SRR5856935 | leaf | control | 1.52 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.84 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.24 | MC |
| SRR6168973 | leaf | none (control) | 0.71 | MC |
| SRR6168974 | leaf | none (control) | 1.74 | MC |
| SRR6168975 | leaf | none (control) | 3.14 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.34 | MC |
| SRR8582888 | panicle | AM | 0.71 | MC |
| SRR8582889 | panicle | AM | 0.21 | MC |
| SRR8582890 | panicle | AM | 0.74 | MC |
| SRR8582891 | panicle | PM | 0.98 | MC |
| SRR8582892 | panicle | PM | 1.39 | MC |
| SRR8582893 | panicle | PM | 0.43 | MC |
| SRR5110429 | panicle | Dawn | 1.42 | MC |
| SRR5110431 | panicle | Dawn | 1.50 | MC |
| SRR4947496 | root | control | 0.95 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.00 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.48 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.39 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.18 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.57 | MC |
| SRR5110446 | panicle | Dusk | 1.46 | MC |
| SRR5110447 | panicle | Dusk | 1.31 | MC |
| SRR5110448 | panicle | Dusk | 1.06 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.86 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.39 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.00 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.14 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.07 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.22 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.17 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.55 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.33 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.53 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.84 | MC |
| SRR5126147 | root | "mock,1_day" | 3.61 | MC |
| SRR5126148 | root | "mock,1_day" | 2.48 | MC |
| SRR5126149 | root | "mock,1_day" | 4.39 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.33 | MC |
| SRR5126153 | root | "mock,7_days" | 4.13 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.71 | MC |
| SRR4947479 | root | control | 1.55 | MC |
| SRR4947480 | root | control | 1.65 | MC |
| SRR4947481 | root | control | 1.89 | MC |
| SRR4947483 | root | Al | 0.71 | MC |
| SRR4947484 | root | Al | 1.66 | MC |
| SRR4947485 | root | Al | 1.12 | MC |
| SRR4947488 | root | control | 0.47 | MC |
| SRR4947489 | root | control | 0.98 | MC |
| SRR4947492 | root | Al | 1.28 | MC |
| SRR4947497 | root | control | 1.63 | MC |
| SRR4947499 | root | Al | 1.12 | MC |
| SRR4947500 | root | Al | 2.65 | MC |
| SRR4947501 | root | Al | 1.64 | MC |
| SRR4947503 | root | control | 1.51 | MC |
| SRR4947504 | root | control | 1.81 | MC |
| SRR4947505 | root | control | 2.05 | MC |
| SRR4947506 | root | Al | 0.43 | MC |
| SRR4947507 | root | Al | 0.77 | MC |
| SRR4947509 | root | Al | 1.23 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.17 | MC |
| SRR3098741 | seedling | wt | 2.06 | MC |
| SRR3098742 | seedling | wt | 2.10 | MC |
| SRR3098743 | seedling | wt | 0.83 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.70 | MC |
| SRR358793 | seedling | wt | 3.54 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.17 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.91 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.93 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.51 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.01 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.03 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.80 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.20 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.62 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.62 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.57 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.59 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.76 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.07 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.64 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.04 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.48 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.87 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.43 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.49 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.94 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.19 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.96 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.89 | MC |