| SRR358795 | callus | wt | 1.05 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR4947495 | root | control | 4.29 | MC |
| SRR7265412 | coleoptile | 4dA | 0.45 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR7265389 | embryo | 12hA | 1.92 | MC |
| SRR7265394 | embryo | 24hA | 0.55 | MC |
| SRR7265395 | embryo | 24hA | 0.87 | MC |
| SRR7265396 | embryo | 24hA | 1.08 | MC |
| SRR6502088 | leaf | control | 1.18 | MC |
| SRR6502101 | leaf | control | 0.67 | MC |
| SRR5856929 | leaf | control | 0.85 | MC |
| SRR5856933 | leaf | control | 1.72 | MC |
| SRR6168981 | leaf | none (control) | 0.89 | MC |
| SRR5126147 | root | "mock,1_day" | 0.61 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.75 | MC |
| SRR5126153 | root | "mock,7_days" | 0.61 | MC |
| SRR5126155 | root | "mock,7_days" | 0.31 | MC |
| SRR5126157 | root | "mock,7_days" | 0.41 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.68 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR5126165 | root | "mock,14_days" | 0.92 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.59 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.88 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.23 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.49 | MC |
| SRR4947494 | root | control | 3.69 | MC |
| SRR4947502 | root | control | 3.09 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502106 | root | control | 0.47 | MC |
| SRR6502107 | root | control | 0.39 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.82 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.91 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.37 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.03 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.53 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.16 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.51 | MC |
| SRR2154083 | seedling | wt | 2.49 | MC |
| SRR2154087 | seedling | wt | 3.66 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.80 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.93 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.56 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.84 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.68 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.66 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.33 | MC |