| SRR4457252 | 2nd_leaf | DAH12 | 1.54 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.75 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.92 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.39 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.13 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.67 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.88 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.93 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.30 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.78 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.77 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.40 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.23 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.67 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.12 | MC |
| SRR358795 | callus | wt | 2.15 | MC |
| SRR358796 | callus | wt | 1.24 | MC |
| SRR358797 | callus | wt | 1.60 | MC |
| SRR358798 | callus | wt | 1.99 | MC |
| SRR5560727 | caryopsis | wild_type | 3.87 | MC |
| SRR5560728 | caryopsis | wild_type | 2.19 | MC |
| SRR5560729 | caryopsis | wild_type | 5.03 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.34 | MC |
| SRR4947495 | root | control | 0.79 | MC |
| SRR7265400 | coleoptile | 2dA | 1.15 | MC |
| SRR7265401 | coleoptile | 2dA | 0.37 | MC |
| SRR7265402 | coleoptile | 2dA | 1.53 | MC |
| SRR7265403 | coleoptile | 2dN | 0.60 | MC |
| SRR7265404 | coleoptile | 2dN | 0.79 | MC |
| SRR7265405 | coleoptile | 2dN | 0.77 | MC |
| SRR7265406 | coleoptile | 3dA | 0.42 | MC |
| SRR7265407 | coleoptile | 3dA | 0.69 | MC |
| SRR7265409 | coleoptile | 3dN | 0.46 | MC |
| SRR7265411 | coleoptile | 3dN | 0.63 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.54 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.68 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.73 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.96 | MC |
| SRR7265377 | embryo | 1hA | 1.61 | MC |
| SRR7265378 | embryo | 1hA | 1.30 | MC |
| SRR7265379 | embryo | 1hN | 0.62 | MC |
| SRR7265381 | embryo | 1hN | 0.53 | MC |
| SRR7265382 | embryo | 3hA | 0.43 | MC |
| SRR7265383 | embryo | 3hA | 1.20 | MC |
| SRR7265386 | embryo | 3hN | 0.49 | MC |
| SRR7265387 | embryo | 3hN | 0.33 | MC |
| SRR7265389 | embryo | 12hA | 1.48 | MC |
| SRR7265392 | embryo | 12hN | 0.68 | MC |
| SRR7265393 | embryo | 12hN | 0.65 | MC |
| SRR7265395 | embryo | 24hA | 2.14 | MC |
| SRR7265396 | embryo | 24hA | 0.71 | MC |
| SRR7265398 | embryo | 24hN | 0.45 | MC |
| SRR2338866 | endosprem | control | 1.76 | MC |
| SRR2338867 | endosprem | control | 1.16 | MC |
| SRR2338868 | endosprem | high_temperature | 1.66 | MC |
| SRR976168 | flag_leaf | wild_type | 2.36 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.65 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.82 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.30 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.50 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.87 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.59 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.94 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.47 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.82 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.07 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.19 | MC |
| SRR4457248 | flag_leaf | DAH44 | 6.27 | MC |
| SRR8060836 | leaf | wild_type | 1.11 | MC |
| SRR8240825 | leaf | wild_type | 0.28 | MC |
| SRR8240826 | leaf | wild_type | 0.84 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.51 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.09 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.10 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.62 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.39 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.72 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.58 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.61 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.71 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.62 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.83 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.01 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.45 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.11 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.94 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.64 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.33 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.87 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.28 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.45 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.87 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.28 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.45 | MC |
| SRR1761528 | leaf | drought | 2.87 | MC |
| SRR1761529 | leaf | drought | 3.28 | MC |
| SRR1761531 | leaf | control | 5.45 | MC |
| SRR504365 | leaf | wt | 1.07 | MC |
| SRR6417968 | leaf | H2O_control | 0.41 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.81 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.76 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.77 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.32 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.66 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.48 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.43 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.56 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.14 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.39 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.60 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.70 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.94 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.28 | MC |
| SRR1213692 | leaf | wt | 1.71 | MC |
| SRR1213693 | leaf | wt | 0.40 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.68 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.29 | MC |
| SRR6502101 | leaf | control | 2.84 | MC |
| SRR6502102 | leaf | control | 4.36 | MC |
| SRR5856927 | leaf | control | 0.37 | MC |
| SRR5856928 | leaf | control | 0.23 | MC |
| SRR5856930 | leaf | salt | 0.58 | MC |
| SRR5856933 | leaf | control | 0.54 | MC |
| SRR5856934 | leaf | control | 0.30 | MC |
| SRR5856935 | leaf | control | 1.02 | MC |
| SRR5856936 | leaf | salt | 0.38 | MC |
| SRR5856937 | leaf | salt | 0.49 | MC |
| SRR5856938 | leaf | salt | 0.40 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.17 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.08 | MC |
| SRR6168973 | leaf | none (control) | 3.76 | MC |
| SRR6168974 | leaf | none (control) | 4.25 | MC |
| SRR6168975 | leaf | none (control) | 3.69 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.47 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.57 | MC |
| SRR6168979 | leaf | none (control) | 0.23 | MC |
| SRR6168980 | leaf | none (control) | 0.66 | MC |
| SRR6168981 | leaf | none (control) | 0.89 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.43 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR8582890 | panicle | AM | 0.43 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.62 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.93 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.26 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.70 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.76 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.02 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.34 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.55 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.38 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.36 | MC |
| SRR1633182 | panicle | WT | 0.33 | MC |
| SRR1633185 | panicle | WT | 0.84 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.14 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126153 | root | "mock,7_days" | 0.44 | MC |
| SRR5126155 | root | "mock,7_days" | 1.42 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.46 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.66 | MC |
| SRR5126165 | root | "mock,14_days" | 1.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.86 | MC |
| SRR5126169 | root | "mock,14_days" | 0.46 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.66 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.51 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.54 | MC |
| SRR1213694 | root | wt | 1.66 | MC |
| SRR1213695 | root | wt | 0.76 | MC |
| SRR4947479 | root | control | 1.45 | MC |
| SRR4947482 | root | Al | 1.86 | MC |
| SRR4947483 | root | Al | 0.76 | MC |
| SRR4947484 | root | Al | 1.00 | MC |
| SRR4947487 | root | control | 0.91 | MC |
| SRR4947488 | root | control | 0.47 | MC |
| SRR4947489 | root | control | 0.48 | MC |
| SRR4947490 | root | Al | 1.70 | MC |
| SRR4947491 | root | Al | 1.62 | MC |
| SRR4947492 | root | Al | 1.82 | MC |
| SRR4947497 | root | control | 0.65 | MC |
| SRR4947498 | root | Al | 2.15 | MC |
| SRR4947499 | root | Al | 0.63 | MC |
| SRR4947500 | root | Al | 0.67 | MC |
| SRR4947501 | root | Al | 0.65 | MC |
| SRR4947506 | root | Al | 1.01 | MC |
| SRR4947507 | root | Al | 1.22 | MC |
| SRR4947508 | root | Al | 0.88 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.58 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.38 | MC |
| SRR6502106 | root | control | 1.89 | MC |
| SRR6502107 | root | control | 1.07 | MC |
| SRR6502108 | root | control | 1.40 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.43 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR6441555 | seedling | wild_type | 0.66 | MC |
| SRR2154086 | seedling | wt | 1.26 | MC |
| SRR2154082 | seedling | wt | 2.98 | MC |
| SRR2154085 | seedling | wt | 0.79 | MC |
| SRR2154087 | seedling | wt | 2.64 | MC |
| SRR3098741 | seedling | wt | 1.37 | MC |
| SRR3098742 | seedling | wt | 2.12 | MC |
| SRR3098743 | seedling | wt | 1.63 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.50 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.62 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.18 | MC |
| SRR358791 | seedling | wt | 1.84 | MC |
| SRR358792 | seedling | wt | 2.56 | MC |
| SRR358793 | seedling | wt | 1.49 | MC |
| SRR358794 | seedling | wt | 1.44 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.36 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.87 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.69 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.64 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.60 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.53 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.60 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.71 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.18 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.97 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.52 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.13 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.63 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.06 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.93 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.67 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.22 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.05 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.11 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.67 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.94 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.87 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.93 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.14 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.06 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.44 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.37 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.87 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.95 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.86 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.38 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.84 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.94 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.57 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.84 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.08 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.69 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.80 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.23 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.48 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.95 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.03 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.23 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.93 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.93 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.94 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.39 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.99 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.48 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.54 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.52 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.28 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.13 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.28 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.83 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.55 | MC |