| SRR6320473 | carpel | wt | 2.50 | MC |
| SRR6320498 | carpel | wt | 1.45 | MC |
| SRR5560727 | caryopsis | wild_type | 0.40 | MC |
| SRR5560728 | caryopsis | wild_type | 1.04 | MC |
| SRR5560729 | caryopsis | wild_type | 2.39 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.17 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.49 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.52 | MC |
| SRR7265403 | coleoptile | 2dN | 3.62 | MC |
| SRR7265404 | coleoptile | 2dN | 2.60 | MC |
| SRR7265405 | coleoptile | 2dN | 2.83 | MC |
| SRR7265406 | coleoptile | 3dA | 1.93 | MC |
| SRR7265407 | coleoptile | 3dA | 1.95 | MC |
| SRR7265408 | coleoptile | 3dA | 0.98 | MC |
| SRR7265412 | coleoptile | 4dA | 0.95 | MC |
| SRR7265413 | coleoptile | 4dA | 3.39 | MC |
| SRR7265414 | coleoptile | 4dA | 1.32 | MC |
| SRR7265415 | coleoptile | 4dN | 2.85 | MC |
| SRR7265416 | coleoptile | 4dN | 2.68 | MC |
| SRR7265417 | coleoptile | 4dN | 2.27 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.81 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.41 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.40 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.00 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.72 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.75 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.17 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.97 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.58 | MC |
| SRR7265376 | embryo | 1hA | 1.50 | MC |
| SRR7265377 | embryo | 1hA | 1.53 | MC |
| SRR7265378 | embryo | 1hA | 1.85 | MC |
| SRR7265379 | embryo | 1hN | 1.79 | MC |
| SRR7265380 | embryo | 1hN | 1.45 | MC |
| SRR7265381 | embryo | 1hN | 1.73 | MC |
| SRR7265382 | embryo | 3hA | 2.06 | MC |
| SRR7265383 | embryo | 3hA | 1.69 | MC |
| SRR7265384 | embryo | 3hA | 1.52 | MC |
| SRR7265385 | embryo | 3hN | 0.98 | MC |
| SRR7265386 | embryo | 3hN | 0.99 | MC |
| SRR7265387 | embryo | 3hN | 1.16 | MC |
| SRR7265388 | embryo | 12hA | 2.40 | MC |
| SRR7265389 | embryo | 12hA | 3.31 | MC |
| SRR7265390 | embryo | 12hA | 2.48 | MC |
| SRR7265391 | embryo | 12hN | 2.78 | MC |
| SRR7265392 | embryo | 12hN | 2.87 | MC |
| SRR7265393 | embryo | 12hN | 2.70 | MC |
| SRR7265394 | embryo | 24hA | 3.63 | MC |
| SRR7265395 | embryo | 24hA | 4.71 | MC |
| SRR7265396 | embryo | 24hA | 4.46 | MC |
| SRR7265397 | embryo | 24hN | 4.90 | MC |
| SRR7265398 | embryo | 24hN | 4.71 | MC |
| SRR7265399 | embryo | 24hN | 3.11 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.61 | MC |
| SRR8240820 | leaf | wild_type | 0.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.55 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.12 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.33 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.52 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.46 | MC |
| SRR5856927 | leaf | control | 0.20 | MC |
| SRR5856929 | leaf | control | 0.19 | MC |
| SRR5856930 | leaf | salt | 0.19 | MC |
| SRR5856931 | leaf | salt | 0.26 | MC |
| SRR5856932 | leaf | salt | 0.19 | MC |
| SRR5856934 | leaf | control | 0.20 | MC |
| SRR5856935 | leaf | control | 0.30 | MC |
| SRR5856936 | leaf | salt | 0.13 | MC |
| SRR5856937 | leaf | salt | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.36 | MC |
| SRR6168973 | leaf | none (control) | 0.87 | MC |
| SRR6168974 | leaf | none (control) | 1.08 | MC |
| SRR6168975 | leaf | none (control) | 0.41 | MC |
| SRR6168981 | leaf | none (control) | 0.24 | MC |
| SRR5110429 | panicle | Dawn | 0.42 | MC |
| SRR5110431 | panicle | Dawn | 0.43 | MC |
| SRR5110432 | panicle | Dawn | 1.48 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.80 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.44 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.79 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.31 | MC |
| SRR5110445 | panicle | Dusk | 0.46 | MC |
| SRR5110446 | panicle | Dusk | 1.16 | MC |
| SRR5110447 | panicle | Dusk | 0.41 | MC |
| SRR5110448 | panicle | Dusk | 0.64 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.27 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.67 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.42 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.91 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.00 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.92 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.44 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.59 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.81 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.37 | MC |
| SRR1633182 | panicle | WT | 1.88 | MC |
| SRR1633185 | panicle | WT | 4.30 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.21 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.46 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.59 | MC |
| SRR5126147 | root | "mock,1_day" | 0.30 | MC |
| SRR5126148 | root | "mock,1_day" | 0.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.31 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.88 | MC |
| SRR5126153 | root | "mock,7_days" | 0.48 | MC |
| SRR5126157 | root | "mock,7_days" | 0.80 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.68 | MC |
| SRR5126165 | root | "mock,14_days" | 0.49 | MC |
| SRR5126169 | root | "mock,14_days" | 0.41 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.72 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502094 | root | control | 0.67 | MC |
| SRR6502095 | root | control | 0.60 | MC |
| SRR6502096 | root | control | 0.47 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502106 | root | control | 0.92 | MC |
| SRR6502107 | root | control | 0.64 | MC |
| SRR6502108 | root | control | 0.66 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.32 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.32 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.19 | MC |
| SRR6441554 | seedling | wild_type | 0.27 | MC |
| SRR2154084 | seedling | wt | 0.48 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR3098741 | seedling | wt | 0.26 | MC |
| SRR3098742 | seedling | wt | 0.65 | MC |
| SRR3098743 | seedling | wt | 0.55 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.76 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.43 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.80 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.64 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.80 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.28 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.90 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.87 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.97 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.82 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.77 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.54 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.72 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.44 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.75 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |