| SRR4457250 | 2nd_leaf | DAH4 | 2.89 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.50 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.33 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.07 | MC |
| SRR3745126 | anther | wt | 4.14 | MC |
| SRR3745127 | anther | wt | 2.50 | MC |
| SRR358795 | callus | wt | 1.83 | MC |
| SRR358796 | callus | wt | 2.66 | MC |
| SRR358797 | callus | wt | 3.19 | MC |
| SRR358798 | callus | wt | 3.40 | MC |
| SRR5560727 | caryopsis | wild_type | 2.37 | MC |
| SRR5560728 | caryopsis | wild_type | 4.80 | MC |
| SRR4947495 | root | control | 2.93 | MC |
| SRR7265415 | coleoptile | 4dN | 4.42 | MC |
| SRR7265416 | coleoptile | 4dN | 4.20 | MC |
| SRR7265417 | coleoptile | 4dN | 3.82 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.84 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.60 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.82 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.06 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.80 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.08 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.68 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.25 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.53 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.99 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.56 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.09 | MC |
| SRR2338866 | endosprem | control | 1.42 | MC |
| SRR2338867 | endosprem | control | 1.51 | MC |
| SRR2338868 | endosprem | high_temperature | 1.00 | MC |
| SRR2338869 | endosprem | high_temperature | 2.18 | MC |
| SRR8060835 | leaf | wild_type | 1.11 | MC |
| SRR8060836 | leaf | wild_type | 2.18 | MC |
| SRR8060837 | leaf | wild_type | 1.64 | MC |
| SRR8240824 | leaf | wild_type | 0.37 | MC |
| SRR8240825 | leaf | wild_type | 0.86 | MC |
| SRR8240820 | leaf | wild_type | 0.36 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.00 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.49 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.07 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.07 | MC |
| SRR1761528 | leaf | drought | 5.07 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.60 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.08 | MC |
| SRR6417967 | leaf | H2O_control | 3.07 | MC |
| SRR6417969 | leaf | H2O_control | 2.66 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.54 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.16 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.37 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.40 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.29 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.50 | MC |
| SRR6502088 | leaf | control | 4.09 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.23 | MC |
| SRR5856927 | leaf | control | 2.00 | MC |
| SRR5856933 | leaf | control | 2.24 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.27 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.74 | MC |
| SRR6168973 | leaf | none (control) | 1.79 | MC |
| SRR6168974 | leaf | none (control) | 1.58 | MC |
| SRR6168975 | leaf | none (control) | 1.28 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.18 | MC |
| SRR6168979 | leaf | none (control) | 1.56 | MC |
| SRR6168980 | leaf | none (control) | 1.02 | MC |
| SRR6168981 | leaf | none (control) | 0.65 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.55 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.17 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.19 | MC |
| SRR8582888 | panicle | AM | 2.61 | MC |
| SRR8582889 | panicle | AM | 1.49 | MC |
| SRR8582891 | panicle | PM | 1.77 | MC |
| SRR8582892 | panicle | PM | 1.43 | MC |
| SRR8582893 | panicle | PM | 0.94 | MC |
| SRR4947496 | root | control | 4.15 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.04 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.20 | MC |
| SRR1633182 | panicle | WT | 1.22 | MC |
| SRR1633185 | panicle | WT | 3.11 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.46 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.49 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.12 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.15 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.05 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.13 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.06 | MC |
| SRR1213694 | root | wt | 1.84 | MC |
| SRR4947478 | root | control | 3.49 | MC |
| SRR4947479 | root | control | 4.06 | MC |
| SRR4947480 | root | control | 3.10 | MC |
| SRR4947487 | root | control | 2.58 | MC |
| SRR4947488 | root | control | 3.62 | MC |
| SRR4947489 | root | control | 2.88 | MC |
| SRR4947491 | root | Al | 4.41 | MC |
| SRR4947493 | root | Al | 3.51 | MC |
| SRR4947494 | root | control | 3.60 | MC |
| SRR4947497 | root | control | 2.96 | MC |
| SRR4947501 | root | Al | 4.44 | MC |
| SRR4947502 | root | control | 4.39 | MC |
| SRR4947503 | root | control | 3.47 | MC |
| SRR4947504 | root | control | 4.93 | MC |
| SRR4947505 | root | control | 5.15 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.81 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.53 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.37 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.70 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.95 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.38 | MC |
| SRR6441554 | seedling | wild_type | 2.01 | MC |
| SRR6441555 | seedling | wild_type | 1.54 | MC |
| SRR2154086 | seedling | wt | 3.97 | MC |
| SRR2154087 | seedling | wt | 3.66 | MC |
| SRR358791 | seedling | wt | 7.15 | MC |
| SRR358792 | seedling | wt | 6.41 | MC |
| SRR358793 | seedling | wt | 3.11 | MC |
| SRR358794 | seedling | wt | 1.99 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.97 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.14 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.72 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.38 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.32 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.04 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.27 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.24 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.54 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.09 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.65 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.05 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.32 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.05 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.48 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.95 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.27 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.86 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.44 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.17 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.94 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.62 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.14 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.60 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.27 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.18 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.61 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.18 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.12 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.43 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.03 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.05 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.09 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.88 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.26 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.27 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.54 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.22 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.91 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.35 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.86 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.60 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.11 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.83 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.49 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.23 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.10 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.38 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.64 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.63 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.77 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.45 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.58 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.90 | MC |