| SRR3745125 | anther | wt | 1.69 | MC |
| SRR3745126 | anther | wt | 1.49 | MC |
| SRR3745127 | anther | wt | 1.09 | MC |
| SRR358795 | callus | wt | 3.08 | MC |
| SRR358796 | callus | wt | 3.14 | MC |
| SRR358797 | callus | wt | 4.88 | MC |
| SRR358798 | callus | wt | 4.12 | MC |
| SRR6320473 | carpel | wt | 2.70 | MC |
| SRR6320498 | carpel | wt | 1.07 | MC |
| SRR5560727 | caryopsis | wild_type | 5.03 | MC |
| SRR7265401 | coleoptile | 2dA | 1.70 | MC |
| SRR7265402 | coleoptile | 2dA | 2.73 | MC |
| SRR7265403 | coleoptile | 2dN | 3.13 | MC |
| SRR7265404 | coleoptile | 2dN | 1.70 | MC |
| SRR7265405 | coleoptile | 2dN | 2.00 | MC |
| SRR7265410 | coleoptile | 3dN | 2.27 | MC |
| SRR7265412 | coleoptile | 4dA | 1.90 | MC |
| SRR7265413 | coleoptile | 4dA | 1.97 | MC |
| SRR7265414 | coleoptile | 4dA | 2.26 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.67 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.91 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.59 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.51 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.82 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.74 | MC |
| SRR7265382 | embryo | 3hA | 4.26 | MC |
| SRR7265383 | embryo | 3hA | 3.11 | MC |
| SRR7265384 | embryo | 3hA | 3.48 | MC |
| SRR7265388 | embryo | 12hA | 2.53 | MC |
| SRR7265389 | embryo | 12hA | 3.18 | MC |
| SRR7265390 | embryo | 12hA | 2.87 | MC |
| SRR7265391 | embryo | 12hN | 1.51 | MC |
| SRR7265392 | embryo | 12hN | 1.12 | MC |
| SRR7265393 | embryo | 12hN | 0.97 | MC |
| SRR7265394 | embryo | 24hA | 5.00 | MC |
| SRR7265395 | embryo | 24hA | 4.09 | MC |
| SRR7265397 | embryo | 24hN | 2.18 | MC |
| SRR7265398 | embryo | 24hN | 1.59 | MC |
| SRR7265399 | embryo | 24hN | 1.89 | MC |
| SRR2338866 | endosprem | control | 1.21 | MC |
| SRR2338867 | endosprem | control | 1.29 | MC |
| SRR2338868 | endosprem | high_temperature | 1.68 | MC |
| SRR2338869 | endosprem | high_temperature | 1.80 | MC |
| SRR8240825 | leaf | wild_type | 1.24 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.15 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.34 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.03 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.38 | MC |
| SRR5856928 | leaf | control | 0.24 | MC |
| SRR5856929 | leaf | control | 0.37 | MC |
| SRR5856930 | leaf | salt | 0.27 | MC |
| SRR5856931 | leaf | salt | 0.25 | MC |
| SRR5856932 | leaf | salt | 0.31 | MC |
| SRR5856933 | leaf | control | 0.90 | MC |
| SRR5856934 | leaf | control | 0.49 | MC |
| SRR5856935 | leaf | control | 0.72 | MC |
| SRR5856936 | leaf | salt | 0.90 | MC |
| SRR5856937 | leaf | salt | 0.75 | MC |
| SRR5856938 | leaf | salt | 0.61 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.30 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.01 | MC |
| SRR6168980 | leaf | none (control) | 1.31 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.42 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.59 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.25 | MC |
| SRR4947496 | root | control | 0.60 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.03 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.37 | MC |
| SRR1633182 | panicle | WT | 3.40 | MC |
| SRR1633185 | panicle | WT | 5.10 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.95 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.47 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.08 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.27 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.39 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.41 | MC |
| SRR5126147 | root | "mock,1_day" | 1.22 | MC |
| SRR5126148 | root | "mock,1_day" | 1.44 | MC |
| SRR5126149 | root | "mock,1_day" | 1.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.39 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.46 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.28 | MC |
| SRR5126153 | root | "mock,7_days" | 1.52 | MC |
| SRR5126155 | root | "mock,7_days" | 1.71 | MC |
| SRR5126157 | root | "mock,7_days" | 1.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.08 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.11 | MC |
| SRR5126165 | root | "mock,14_days" | 2.90 | MC |
| SRR5126167 | root | "mock,14_days" | 2.15 | MC |
| SRR5126169 | root | "mock,14_days" | 1.24 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.44 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.22 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.40 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.59 | MC |
| SRR1213694 | root | wt | 1.33 | MC |
| SRR4947480 | root | control | 0.64 | MC |
| SRR4947481 | root | control | 1.03 | MC |
| SRR4947484 | root | Al | 0.92 | MC |
| SRR4947485 | root | Al | 0.71 | MC |
| SRR4947488 | root | control | 0.70 | MC |
| SRR4947489 | root | control | 0.76 | MC |
| SRR4947492 | root | Al | 0.95 | MC |
| SRR4947497 | root | control | 1.06 | MC |
| SRR4947500 | root | Al | 0.72 | MC |
| SRR4947501 | root | Al | 1.15 | MC |
| SRR4947504 | root | control | 0.93 | MC |
| SRR4947508 | root | Al | 0.80 | MC |
| SRR4947509 | root | Al | 1.35 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.96 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.25 | MC |
| SRR6502094 | root | control | 1.46 | MC |
| SRR6502095 | root | control | 1.52 | MC |
| SRR6502096 | root | control | 0.94 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.50 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.29 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.81 | MC |
| SRR6502106 | root | control | 0.94 | MC |
| SRR6502107 | root | control | 1.56 | MC |
| SRR6502108 | root | control | 1.23 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.58 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.46 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.80 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.28 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.59 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.48 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.46 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.45 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.41 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.14 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.28 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.71 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.25 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.73 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.47 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.33 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.01 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.93 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.85 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.90 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.12 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.68 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.33 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.92 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.68 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.67 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.91 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.49 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.95 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.00 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.17 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.31 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.47 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.10 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.06 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.80 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.57 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.43 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.76 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.59 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.28 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.24 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.91 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.88 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.78 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.16 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.06 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.29 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.06 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.75 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.41 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.86 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.50 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.75 | MC |