| SRR358795 | callus | wt | 1.63 | MC |
| SRR358796 | callus | wt | 4.32 | MC |
| SRR358797 | callus | wt | 6.10 | MC |
| SRR358798 | callus | wt | 6.56 | MC |
| SRR5560727 | caryopsis | wild_type | 0.87 | MC |
| SRR5560728 | caryopsis | wild_type | 0.50 | MC |
| SRR5560729 | caryopsis | wild_type | 1.05 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.90 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.72 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.08 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.87 | MC |
| SRR7265401 | coleoptile | 2dA | 0.72 | MC |
| SRR7265403 | coleoptile | 2dN | 0.91 | MC |
| SRR7265404 | coleoptile | 2dN | 0.72 | MC |
| SRR7265405 | coleoptile | 2dN | 0.75 | MC |
| SRR7265406 | coleoptile | 3dA | 0.38 | MC |
| SRR7265407 | coleoptile | 3dA | 0.38 | MC |
| SRR7265409 | coleoptile | 3dN | 0.81 | MC |
| SRR7265410 | coleoptile | 3dN | 0.59 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.76 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.47 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.21 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.33 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.61 | MC |
| SRR7265388 | embryo | 12hA | 1.23 | MC |
| SRR7265389 | embryo | 12hA | 1.82 | MC |
| SRR7265390 | embryo | 12hA | 1.20 | MC |
| SRR7265391 | embryo | 12hN | 1.28 | MC |
| SRR7265392 | embryo | 12hN | 0.90 | MC |
| SRR7265393 | embryo | 12hN | 1.49 | MC |
| SRR7265394 | embryo | 24hA | 1.01 | MC |
| SRR7265395 | embryo | 24hA | 0.92 | MC |
| SRR7265396 | embryo | 24hA | 0.54 | MC |
| SRR7265397 | embryo | 24hN | 1.43 | MC |
| SRR7265398 | embryo | 24hN | 0.79 | MC |
| SRR7265399 | embryo | 24hN | 0.97 | MC |
| SRR2338867 | endosprem | control | 0.61 | MC |
| SRR2338868 | endosprem | high_temperature | 1.01 | MC |
| SRR2338869 | endosprem | high_temperature | 0.72 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.55 | MC |
| SRR1213691 | flower | wt | 1.21 | MC |
| SRR8060835 | leaf | wild_type | 0.66 | MC |
| SRR8060837 | leaf | wild_type | 0.31 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.78 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.90 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.21 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.76 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.97 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.87 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.28 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.01 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.02 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.03 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.37 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.08 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.32 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.19 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.38 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.74 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.42 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.12 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.92 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.83 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.04 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.50 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.61 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.67 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.61 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.77 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.89 | MC |
| SRR6502089 | leaf | control | 0.89 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR5856927 | leaf | control | 0.22 | MC |
| SRR5856929 | leaf | control | 0.54 | MC |
| SRR5856932 | leaf | salt | 0.20 | MC |
| SRR5856933 | leaf | control | 0.27 | MC |
| SRR5856934 | leaf | control | 0.19 | MC |
| SRR5856935 | leaf | control | 0.50 | MC |
| SRR5856938 | leaf | salt | 0.21 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.36 | MC |
| SRR6168979 | leaf | none (control) | 0.28 | MC |
| SRR8582888 | panicle | AM | 0.86 | MC |
| SRR8582889 | panicle | AM | 0.17 | MC |
| SRR8582890 | panicle | AM | 0.47 | MC |
| SRR8582891 | panicle | PM | 1.19 | MC |
| SRR8582892 | panicle | PM | 4.11 | MC |
| SRR8582893 | panicle | PM | 1.62 | MC |
| SRR5110429 | panicle | Dawn | 0.75 | MC |
| SRR5110431 | panicle | Dawn | 0.68 | MC |
| SRR5110432 | panicle | Dawn | 0.77 | MC |
| SRR4947496 | root | control | 1.79 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.81 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.84 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.56 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.21 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.94 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.04 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.26 | MC |
| SRR5110446 | panicle | Dusk | 0.90 | MC |
| SRR5110447 | panicle | Dusk | 0.70 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.34 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.31 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.41 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.54 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.78 | MC |
| SRR1633182 | panicle | WT | 2.82 | MC |
| SRR1633185 | panicle | WT | 1.60 | MC |
| SRR5126147 | root | "mock,1_day" | 0.89 | MC |
| SRR5126148 | root | "mock,1_day" | 1.45 | MC |
| SRR5126149 | root | "mock,1_day" | 0.82 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.90 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.29 | MC |
| SRR5126153 | root | "mock,7_days" | 0.91 | MC |
| SRR5126155 | root | "mock,7_days" | 1.11 | MC |
| SRR5126157 | root | "mock,7_days" | 1.73 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.85 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.43 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.62 | MC |
| SRR5126165 | root | "mock,14_days" | 1.05 | MC |
| SRR5126167 | root | "mock,14_days" | 2.26 | MC |
| SRR5126169 | root | "mock,14_days" | 1.39 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.99 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.05 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.46 | MC |
| SRR4947480 | root | control | 1.07 | MC |
| SRR4947481 | root | control | 1.01 | MC |
| SRR4947482 | root | Al | 0.72 | MC |
| SRR4947483 | root | Al | 0.82 | MC |
| SRR4947485 | root | Al | 0.67 | MC |
| SRR4947487 | root | control | 0.61 | MC |
| SRR4947490 | root | Al | 0.49 | MC |
| SRR4947491 | root | Al | 0.55 | MC |
| SRR4947493 | root | Al | 0.71 | MC |
| SRR4947497 | root | control | 1.05 | MC |
| SRR4947498 | root | Al | 2.32 | MC |
| SRR4947499 | root | Al | 1.04 | MC |
| SRR4947501 | root | Al | 1.08 | MC |
| SRR4947503 | root | control | 1.02 | MC |
| SRR4947504 | root | control | 0.98 | MC |
| SRR4947505 | root | control | 0.76 | MC |
| SRR4947506 | root | Al | 0.78 | MC |
| SRR4947507 | root | Al | 1.23 | MC |
| SRR4947509 | root | Al | 1.04 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502106 | root | control | 0.61 | MC |
| SRR6502107 | root | control | 0.67 | MC |
| SRR6502108 | root | control | 0.86 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.51 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.28 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.64 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.57 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.63 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.75 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.79 | MC |
| SRR2154086 | seedling | wt | 0.44 | MC |
| SRR2154082 | seedling | wt | 0.93 | MC |
| SRR2154084 | seedling | wt | 0.71 | MC |
| SRR2154085 | seedling | wt | 0.59 | MC |
| SRR2154087 | seedling | wt | 0.52 | MC |
| SRR3098741 | seedling | wt | 0.44 | MC |
| SRR3098742 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.66 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.11 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.45 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.92 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.61 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.39 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.67 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.50 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.09 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.80 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.86 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.95 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.04 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.78 | MC |