| SRR4457251 | 2nd_leaf | DAH4 | 1.00 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.44 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.83 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.96 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.99 | MC |
| SRR3745126 | anther | wt | 2.26 | MC |
| SRR5560729 | caryopsis | wild_type | 0.97 | MC |
| SRR7265415 | coleoptile | 4dN | 3.51 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR7265394 | embryo | 24hA | 5.17 | MC |
| SRR976168 | flag_leaf | wild_type | 2.52 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.63 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.64 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.66 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.28 | MC |
| SRR1213691 | flower | wt | 2.88 | MC |
| SRR8240825 | leaf | wild_type | 1.40 | MC |
| SRR8240819 | leaf | wild_type | 1.21 | MC |
| SRR8240820 | leaf | wild_type | 0.47 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.94 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.43 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.35 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.97 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.93 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.99 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.72 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.98 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.32 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.22 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.14 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.56 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.55 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.00 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.24 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.84 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.03 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.42 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.19 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.94 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.16 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.16 | MC |
| SRR1761529 | leaf | drought | 3.16 | MC |
| SRR504365 | leaf | wt | 0.46 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.77 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.60 | MC |
| SRR6417968 | leaf | H2O_control | 1.23 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.17 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.28 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.70 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.57 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.51 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.09 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.62 | MC |
| SRR1213692 | leaf | wt | 2.32 | MC |
| SRR1213693 | leaf | wt | 1.05 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.89 | MC |
| SRR6502089 | leaf | control | 1.62 | MC |
| SRR5856927 | leaf | control | 1.41 | MC |
| SRR5856928 | leaf | control | 1.33 | MC |
| SRR5856929 | leaf | control | 0.64 | MC |
| SRR5856933 | leaf | control | 1.57 | MC |
| SRR5856935 | leaf | control | 2.25 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 7.72 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.67 | MC |
| SRR6168973 | leaf | none (control) | 0.84 | MC |
| SRR6168974 | leaf | none (control) | 1.57 | MC |
| SRR6168980 | leaf | none (control) | 1.26 | MC |
| SRR6168981 | leaf | none (control) | 1.06 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.58 | MC |
| SRR8582888 | panicle | AM | 0.67 | MC |
| SRR8582889 | panicle | AM | 0.22 | MC |
| SRR8582890 | panicle | AM | 0.66 | MC |
| SRR5110429 | panicle | Dawn | 2.98 | MC |
| SRR5110431 | panicle | Dawn | 3.20 | MC |
| SRR5110432 | panicle | Dawn | 1.16 | MC |
| SRR4947496 | root | control | 2.68 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.98 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.67 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.15 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.48 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.21 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.96 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.87 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.38 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.99 | MC |
| SRR5110445 | panicle | Dusk | 4.31 | MC |
| SRR5110446 | panicle | Dusk | 1.53 | MC |
| SRR5110447 | panicle | Dusk | 2.41 | MC |
| SRR5110448 | panicle | Dusk | 2.54 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.98 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.11 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.61 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.35 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.41 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.74 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.71 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.82 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.83 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.55 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.75 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.10 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.43 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.86 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.07 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.62 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.45 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.99 | MC |
| SRR5126148 | root | "mock,1_day" | 0.73 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.54 | MC |
| SRR5126153 | root | "mock,7_days" | 0.65 | MC |
| SRR5126155 | root | "mock,7_days" | 0.96 | MC |
| SRR5126157 | root | "mock,7_days" | 0.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.41 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126165 | root | "mock,14_days" | 1.05 | MC |
| SRR5126167 | root | "mock,14_days" | 1.71 | MC |
| SRR5126169 | root | "mock,14_days" | 1.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.22 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.39 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.73 | MC |
| SRR1213695 | root | wt | 1.78 | MC |
| SRR4947479 | root | control | 1.83 | MC |
| SRR4947480 | root | control | 3.25 | MC |
| SRR4947481 | root | control | 3.02 | MC |
| SRR4947490 | root | Al | 3.45 | MC |
| SRR4947492 | root | Al | 3.64 | MC |
| SRR4947493 | root | Al | 0.93 | MC |
| SRR4947497 | root | control | 3.47 | MC |
| SRR4947498 | root | Al | 4.30 | MC |
| SRR4947499 | root | Al | 1.55 | MC |
| SRR4947500 | root | Al | 2.05 | MC |
| SRR4947501 | root | Al | 4.45 | MC |
| SRR4947503 | root | control | 1.47 | MC |
| SRR4947509 | root | Al | 1.73 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.02 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.93 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.34 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.67 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.90 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.48 | MC |
| SRR6441554 | seedling | wild_type | 1.06 | MC |
| SRR6441555 | seedling | wild_type | 1.74 | MC |
| SRR2154086 | seedling | wt | 1.86 | MC |
| SRR2154082 | seedling | wt | 3.34 | MC |
| SRR2154083 | seedling | wt | 2.18 | MC |
| SRR2154084 | seedling | wt | 1.61 | MC |
| SRR2154085 | seedling | wt | 2.14 | MC |
| SRR2154087 | seedling | wt | 2.36 | MC |
| SRR3098741 | seedling | wt | 0.40 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.27 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.75 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.59 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.58 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.97 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.09 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.57 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.87 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.06 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.15 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.15 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.40 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.51 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.06 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.52 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.58 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.74 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.31 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.18 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.66 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.78 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.62 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.44 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.06 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.60 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.79 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.02 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.19 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.60 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.12 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.74 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.04 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.24 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.58 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.48 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.29 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.64 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.00 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.26 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.61 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.34 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.61 | MC |