| SRR358795 | callus | wt | 7.32 | MC |
| SRR6320473 | carpel | wt | 2.01 | MC |
| SRR5560727 | caryopsis | wild_type | 0.33 | MC |
| SRR5560728 | caryopsis | wild_type | 0.52 | MC |
| SRR5560729 | caryopsis | wild_type | 0.59 | MC |
| SRR7265403 | coleoptile | 2dN | 0.83 | MC |
| SRR7265404 | coleoptile | 2dN | 0.81 | MC |
| SRR7265405 | coleoptile | 2dN | 0.96 | MC |
| SRR7265410 | coleoptile | 3dN | 1.28 | MC |
| SRR7265417 | coleoptile | 4dN | 0.61 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.47 | MC |
| SRR7265378 | embryo | 1hA | 3.11 | MC |
| SRR7265379 | embryo | 1hN | 2.76 | MC |
| SRR7265389 | embryo | 12hA | 0.43 | MC |
| SRR7265390 | embryo | 12hA | 1.01 | MC |
| SRR7265391 | embryo | 12hN | 3.27 | MC |
| SRR7265392 | embryo | 12hN | 2.69 | MC |
| SRR7265393 | embryo | 12hN | 3.28 | MC |
| SRR7265398 | embryo | 24hN | 1.89 | MC |
| SRR7265399 | embryo | 24hN | 1.16 | MC |
| SRR1213691 | flower | wt | 0.62 | MC |
| SRR8060835 | leaf | wild_type | 0.38 | MC |
| SRR8060836 | leaf | wild_type | 0.27 | MC |
| SRR8240824 | leaf | wild_type | 0.41 | MC |
| SRR8240820 | leaf | wild_type | 1.43 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.38 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.47 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.36 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.75 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.41 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.36 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.81 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.35 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.10 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.75 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.97 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.94 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.25 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.10 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.19 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.24 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.50 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.50 | MC |
| SRR1761529 | leaf | drought | 2.50 | MC |
| SRR6417968 | leaf | H2O_control | 1.47 | MC |
| SRR6417969 | leaf | H2O_control | 1.03 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.29 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.76 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.64 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR1213693 | leaf | wt | 1.45 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.00 | MC |
| SRR6502100 | leaf | control | 0.54 | MC |
| SRR6502102 | leaf | control | 1.68 | MC |
| SRR5856927 | leaf | control | 0.54 | MC |
| SRR5856928 | leaf | control | 0.32 | MC |
| SRR5856929 | leaf | control | 0.23 | MC |
| SRR5856930 | leaf | salt | 0.76 | MC |
| SRR5856931 | leaf | salt | 0.25 | MC |
| SRR5856932 | leaf | salt | 0.84 | MC |
| SRR5856935 | leaf | control | 0.69 | MC |
| SRR5856936 | leaf | salt | 0.71 | MC |
| SRR5856937 | leaf | salt | 0.61 | MC |
| SRR5856938 | leaf | salt | 0.69 | MC |
| SRR6168973 | leaf | none (control) | 1.45 | MC |
| SRR6168974 | leaf | none (control) | 3.09 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR8582891 | panicle | PM | 0.76 | MC |
| SRR8582892 | panicle | PM | 1.49 | MC |
| SRR8582893 | panicle | PM | 0.42 | MC |
| SRR5110429 | panicle | Dawn | 1.79 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.25 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.35 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.73 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.93 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.52 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.20 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.56 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.00 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.83 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.51 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.59 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.24 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5126147 | root | "mock,1_day" | 1.50 | MC |
| SRR5126149 | root | "mock,1_day" | 1.68 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.98 | MC |
| SRR5126157 | root | "mock,7_days" | 2.91 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.30 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.61 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.40 | MC |
| SRR5126165 | root | "mock,14_days" | 1.40 | MC |
| SRR5126169 | root | "mock,14_days" | 1.13 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.13 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.23 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.63 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.25 | MC |
| SRR4947485 | root | Al | 0.60 | MC |
| SRR4947498 | root | Al | 2.14 | MC |
| SRR4947500 | root | Al | 0.71 | MC |
| SRR4947501 | root | Al | 0.59 | MC |
| SRR4947506 | root | Al | 1.10 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.09 | MC |
| SRR6441554 | seedling | wild_type | 0.29 | MC |
| SRR2154082 | seedling | wt | 1.08 | MC |
| SRR2154085 | seedling | wt | 1.11 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.72 | MC |
| SRR358792 | seedling | wt | 4.19 | MC |
| SRR358793 | seedling | wt | 4.30 | MC |
| SRR358794 | seedling | wt | 3.83 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.70 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.91 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.64 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.99 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.86 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.18 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.24 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.18 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.91 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.89 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.17 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.70 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |