| SRR4457251 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.59 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.77 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.07 | MC |
| SRR6320473 | carpel | wt | 1.14 | MC |
| SRR6320498 | carpel | wt | 5.30 | MC |
| SRR5560727 | caryopsis | wild_type | 0.81 | MC |
| SRR5560728 | caryopsis | wild_type | 2.56 | MC |
| SRR5560729 | caryopsis | wild_type | 1.08 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.09 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.10 | MC |
| SRR7265405 | coleoptile | 2dN | 3.36 | MC |
| SRR7265407 | coleoptile | 3dA | 1.80 | MC |
| SRR7265408 | coleoptile | 3dA | 1.18 | MC |
| SRR7265410 | coleoptile | 3dN | 0.90 | MC |
| SRR7265411 | coleoptile | 3dN | 1.13 | MC |
| SRR7265412 | coleoptile | 4dA | 1.26 | MC |
| SRR7265413 | coleoptile | 4dA | 3.13 | MC |
| SRR7265415 | coleoptile | 4dN | 1.87 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.34 | MC |
| SRR7265376 | embryo | 1hA | 1.23 | MC |
| SRR7265380 | embryo | 1hN | 1.69 | MC |
| SRR7265383 | embryo | 3hA | 1.95 | MC |
| SRR7265395 | embryo | 24hA | 2.48 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.55 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.66 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.39 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.35 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.56 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.16 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.86 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.67 | MC |
| SRR8060835 | leaf | wild_type | 0.39 | MC |
| SRR8060836 | leaf | wild_type | 0.22 | MC |
| SRR8060837 | leaf | wild_type | 0.27 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.78 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.62 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.90 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.62 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.89 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.32 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.82 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.22 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.40 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.74 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.38 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.21 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.13 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.90 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.73 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.86 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.01 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.01 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.09 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.04 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.83 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.99 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.67 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.81 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.82 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.82 | MC |
| SRR1761529 | leaf | drought | 2.82 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.23 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.67 | MC |
| SRR6417969 | leaf | H2O_control | 2.87 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.93 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.80 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.04 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.11 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.80 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.43 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.82 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.03 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.61 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.92 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.15 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.55 | MC |
| SRR6502088 | leaf | control | 1.13 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.51 | MC |
| SRR6502102 | leaf | control | 1.05 | MC |
| SRR5856927 | leaf | control | 0.19 | MC |
| SRR5856928 | leaf | control | 0.22 | MC |
| SRR5856930 | leaf | salt | 0.19 | MC |
| SRR5856931 | leaf | salt | 0.17 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 0.31 | MC |
| SRR5856936 | leaf | salt | 0.23 | MC |
| SRR5856937 | leaf | salt | 0.23 | MC |
| SRR5856938 | leaf | salt | 0.27 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 6.92 | MC |
| SRR6168973 | leaf | none (control) | 0.88 | MC |
| SRR6168974 | leaf | none (control) | 0.98 | MC |
| SRR6168975 | leaf | none (control) | 0.90 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.36 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.24 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.72 | MC |
| SRR6168981 | leaf | none (control) | 0.32 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.00 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.96 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.66 | MC |
| SRR8582888 | panicle | AM | 0.60 | MC |
| SRR8582889 | panicle | AM | 0.23 | MC |
| SRR8582891 | panicle | PM | 0.78 | MC |
| SRR8582893 | panicle | PM | 0.30 | MC |
| SRR5110429 | panicle | Dawn | 3.32 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.87 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.18 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.46 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.98 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.15 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.90 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.09 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.23 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.99 | MC |
| SRR5110445 | panicle | Dusk | 2.05 | MC |
| SRR5110446 | panicle | Dusk | 3.01 | MC |
| SRR5110448 | panicle | Dusk | 2.22 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.31 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.32 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.41 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.72 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.74 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.01 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.10 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.55 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.78 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.48 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.45 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.39 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.72 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.32 | MC |
| SRR5126153 | root | "mock,7_days" | 0.86 | MC |
| SRR5126155 | root | "mock,7_days" | 0.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.70 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126165 | root | "mock,14_days" | 1.77 | MC |
| SRR5126167 | root | "mock,14_days" | 0.56 | MC |
| SRR5126169 | root | "mock,14_days" | 0.70 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.01 | MC |
| SRR4947479 | root | control | 3.29 | MC |
| SRR4947480 | root | control | 4.46 | MC |
| SRR4947481 | root | control | 2.94 | MC |
| SRR4947483 | root | Al | 3.70 | MC |
| SRR4947484 | root | Al | 2.70 | MC |
| SRR4947485 | root | Al | 2.18 | MC |
| SRR4947487 | root | control | 1.91 | MC |
| SRR4947489 | root | control | 0.49 | MC |
| SRR4947491 | root | Al | 4.62 | MC |
| SRR4947492 | root | Al | 2.03 | MC |
| SRR4947493 | root | Al | 0.91 | MC |
| SRR4947498 | root | Al | 1.19 | MC |
| SRR4947499 | root | Al | 0.84 | MC |
| SRR4947503 | root | control | 1.80 | MC |
| SRR4947505 | root | control | 0.91 | MC |
| SRR4947506 | root | Al | 1.46 | MC |
| SRR4947508 | root | Al | 4.56 | MC |
| SRR4947509 | root | Al | 2.28 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.72 | MC |
| SRR6502096 | root | control | 3.23 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.88 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.16 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.88 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.42 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.06 | MC |
| SRR6441554 | seedling | wild_type | 0.21 | MC |
| SRR2154086 | seedling | wt | 1.65 | MC |
| SRR2154082 | seedling | wt | 1.69 | MC |
| SRR2154083 | seedling | wt | 1.23 | MC |
| SRR2154084 | seedling | wt | 1.68 | MC |
| SRR2154085 | seedling | wt | 1.45 | MC |
| SRR2154087 | seedling | wt | 1.23 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.20 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.38 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.87 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.71 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.74 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.76 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.29 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.56 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.90 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.85 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.21 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.38 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.80 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.41 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.24 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.52 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.51 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.09 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |