| SRR4457249 | 2nd_leaf | DAH4 | 0.89 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.96 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.92 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.86 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.89 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.67 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.93 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.66 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.56 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.95 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.44 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.69 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.83 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.59 | MC |
| SRR358795 | callus | wt | 2.24 | MC |
| SRR358796 | callus | wt | 1.58 | MC |
| SRR358797 | callus | wt | 2.27 | MC |
| SRR358798 | callus | wt | 1.86 | MC |
| SRR6320498 | carpel | wt | 1.18 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.38 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.34 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.54 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.62 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.06 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.37 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.39 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.02 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.43 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.17 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.36 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.52 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.74 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.78 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.46 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.98 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.35 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.94 | MC |
| SRR8060836 | leaf | wild_type | 0.30 | MC |
| SRR8240820 | leaf | wild_type | 0.41 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.75 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.82 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.59 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.88 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.63 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.54 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.59 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.91 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.63 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.54 | MC |
| SRR1761528 | leaf | drought | 0.59 | MC |
| SRR1761529 | leaf | drought | 0.88 | MC |
| SRR1761530 | leaf | control | 0.63 | MC |
| SRR1761531 | leaf | control | 0.54 | MC |
| SRR504365 | leaf | wt | 0.50 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.29 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.32 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.51 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.56 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.38 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.59 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.48 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.46 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.41 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.19 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.61 | MC |
| SRR6502100 | leaf | control | 0.75 | MC |
| SRR6502101 | leaf | control | 0.63 | MC |
| SRR6502102 | leaf | control | 0.39 | MC |
| SRR5856927 | leaf | control | 0.34 | MC |
| SRR5856928 | leaf | control | 0.20 | MC |
| SRR5856932 | leaf | salt | 0.23 | MC |
| SRR5856933 | leaf | control | 0.39 | MC |
| SRR5856934 | leaf | control | 0.44 | MC |
| SRR5856935 | leaf | control | 0.61 | MC |
| SRR5856936 | leaf | salt | 0.22 | MC |
| SRR5856937 | leaf | salt | 0.27 | MC |
| SRR5856938 | leaf | salt | 0.26 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.16 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.11 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.17 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.28 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.30 | MC |
| SRR8582889 | panicle | AM | 0.22 | MC |
| SRR8582891 | panicle | PM | 0.49 | MC |
| SRR8582893 | panicle | PM | 0.42 | MC |
| SRR5110429 | panicle | Dawn | 1.70 | MC |
| SRR5110430 | panicle | Dawn | 0.77 | MC |
| SRR5110431 | panicle | Dawn | 1.21 | MC |
| SRR5110432 | panicle | Dawn | 2.52 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.39 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.91 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.61 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.10 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.58 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.36 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.84 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.23 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.70 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.27 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.97 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.85 | MC |
| SRR5110445 | panicle | Dusk | 2.27 | MC |
| SRR5110446 | panicle | Dusk | 3.19 | MC |
| SRR5110447 | panicle | Dusk | 1.73 | MC |
| SRR5110448 | panicle | Dusk | 2.34 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.78 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.02 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.64 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.85 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.15 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.45 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.16 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.43 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.94 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.95 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.41 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.48 | MC |
| SRR1633182 | panicle | WT | 1.95 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.24 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.21 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.41 | MC |
| SRR5126149 | root | "mock,1_day" | 0.49 | MC |
| SRR5126157 | root | "mock,7_days" | 0.41 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.45 | MC |
| SRR4947478 | root | control | 1.92 | MC |
| SRR4947479 | root | control | 0.48 | MC |
| SRR4947482 | root | Al | 1.16 | MC |
| SRR4947483 | root | Al | 0.98 | MC |
| SRR4947487 | root | control | 1.43 | MC |
| SRR4947490 | root | Al | 1.04 | MC |
| SRR4947491 | root | Al | 1.03 | MC |
| SRR4947494 | root | control | 0.99 | MC |
| SRR4947498 | root | Al | 0.77 | MC |
| SRR4947499 | root | Al | 0.83 | MC |
| SRR4947502 | root | control | 1.08 | MC |
| SRR4947503 | root | control | 1.07 | MC |
| SRR4947506 | root | Al | 0.99 | MC |
| SRR4947507 | root | Al | 1.03 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502106 | root | control | 0.50 | MC |
| SRR6502107 | root | control | 0.42 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.48 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.30 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.27 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.58 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.92 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.48 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR6441555 | seedling | wild_type | 0.41 | MC |
| SRR2154083 | seedling | wt | 1.32 | MC |
| SRR2154084 | seedling | wt | 2.01 | MC |
| SRR3098742 | seedling | wt | 0.21 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR1944583 | seedling | no_treatment | 2.27 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.04 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.14 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.69 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.51 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.31 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.72 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.58 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.14 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.89 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.53 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.95 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.76 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.01 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.25 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.97 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.92 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.66 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.34 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.91 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.10 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.23 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.87 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.56 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.59 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.67 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.38 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.25 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.54 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.52 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.43 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.66 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.54 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.90 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.06 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.67 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.38 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.74 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |