| SRR4457250 | 2nd_leaf | DAH4 | 1.09 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.66 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.06 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.67 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.74 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.82 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.59 | MC |
| SRR3745125 | anther | wt | 0.90 | MC |
| SRR3745126 | anther | wt | 0.55 | MC |
| SRR6320473 | carpel | wt | 6.11 | MC |
| SRR6320498 | carpel | wt | 3.89 | MC |
| SRR7265400 | coleoptile | 2dA | 2.75 | MC |
| SRR7265401 | coleoptile | 2dA | 2.74 | MC |
| SRR7265402 | coleoptile | 2dA | 2.82 | MC |
| SRR7265406 | coleoptile | 3dA | 2.64 | MC |
| SRR7265407 | coleoptile | 3dA | 2.78 | MC |
| SRR7265408 | coleoptile | 3dA | 1.89 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.93 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.69 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.19 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.56 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.74 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.54 | MC |
| SRR2338866 | endosprem | control | 2.59 | MC |
| SRR976168 | flag_leaf | wild_type | 2.26 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.43 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.52 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.68 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.07 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.00 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.66 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.33 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.44 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.46 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.86 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.54 | MC |
| SRR8060835 | leaf | wild_type | 0.23 | MC |
| SRR8060836 | leaf | wild_type | 0.78 | MC |
| SRR8060837 | leaf | wild_type | 0.22 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.95 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.56 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.50 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.89 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.31 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.66 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.17 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.50 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.45 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.61 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.80 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.21 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.66 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.47 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.41 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.04 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.24 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.06 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.24 | MC |
| SRR1761530 | leaf | control | 1.05 | MC |
| SRR1761531 | leaf | control | 1.24 | MC |
| SRR504365 | leaf | wt | 0.75 | MC |
| SRR6417967 | leaf | H2O_control | 1.42 | MC |
| SRR6417968 | leaf | H2O_control | 1.66 | MC |
| SRR6417969 | leaf | H2O_control | 1.63 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.38 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.67 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.79 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.78 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.01 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.62 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.26 | MC |
| SRR1213693 | leaf | wt | 1.41 | MC |
| SRR6502089 | leaf | control | 3.85 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.51 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.91 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.75 | MC |
| SRR6502100 | leaf | control | 2.23 | MC |
| SRR6502101 | leaf | control | 2.59 | MC |
| SRR6502102 | leaf | control | 2.40 | MC |
| SRR5856927 | leaf | control | 1.23 | MC |
| SRR5856928 | leaf | control | 1.05 | MC |
| SRR5856929 | leaf | control | 0.43 | MC |
| SRR5856930 | leaf | salt | 0.93 | MC |
| SRR5856931 | leaf | salt | 0.78 | MC |
| SRR5856932 | leaf | salt | 1.69 | MC |
| SRR5856933 | leaf | control | 0.44 | MC |
| SRR5856934 | leaf | control | 1.09 | MC |
| SRR5856935 | leaf | control | 0.77 | MC |
| SRR5856936 | leaf | salt | 1.37 | MC |
| SRR5856937 | leaf | salt | 1.54 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.44 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.69 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.31 | MC |
| SRR6168973 | leaf | none (control) | 1.00 | MC |
| SRR6168974 | leaf | none (control) | 4.19 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR8582888 | panicle | AM | 1.41 | MC |
| SRR8582889 | panicle | AM | 0.72 | MC |
| SRR8582890 | panicle | AM | 0.78 | MC |
| SRR8582891 | panicle | PM | 0.91 | MC |
| SRR8582892 | panicle | PM | 1.97 | MC |
| SRR8582893 | panicle | PM | 0.97 | MC |
| SRR5110431 | panicle | Dawn | 0.49 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.59 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.38 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.41 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.84 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.20 | MC |
| SRR5110445 | panicle | Dusk | 0.73 | MC |
| SRR5110447 | panicle | Dusk | 0.43 | MC |
| SRR5110448 | panicle | Dusk | 1.05 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.90 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.68 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.81 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.30 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.46 | MC |
| SRR1633185 | panicle | WT | 0.33 | MC |
| SRR5126147 | root | "mock,1_day" | 2.34 | MC |
| SRR5126148 | root | "mock,1_day" | 1.33 | MC |
| SRR5126149 | root | "mock,1_day" | 3.44 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.46 | MC |
| SRR5126153 | root | "mock,7_days" | 0.81 | MC |
| SRR5126155 | root | "mock,7_days" | 2.19 | MC |
| SRR5126157 | root | "mock,7_days" | 2.28 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.70 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.99 | MC |
| SRR5126165 | root | "mock,14_days" | 3.90 | MC |
| SRR5126167 | root | "mock,14_days" | 3.07 | MC |
| SRR5126169 | root | "mock,14_days" | 2.27 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.29 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.44 | MC |
| SRR1213694 | root | wt | 1.25 | MC |
| SRR1213695 | root | wt | 0.86 | MC |
| SRR4947482 | root | Al | 0.56 | MC |
| SRR4947485 | root | Al | 0.52 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.54 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502106 | root | control | 0.40 | MC |
| SRR6441554 | seedling | wild_type | 0.98 | MC |
| SRR6441555 | seedling | wild_type | 0.83 | MC |
| SRR2154086 | seedling | wt | 1.59 | MC |
| SRR2154083 | seedling | wt | 2.71 | MC |
| SRR2154084 | seedling | wt | 2.37 | MC |
| SRR2154085 | seedling | wt | 3.23 | MC |
| SRR2154087 | seedling | wt | 2.42 | MC |
| SRR3098742 | seedling | wt | 1.09 | MC |
| SRR3098743 | seedling | wt | 2.28 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.65 | MC |
| SRR358791 | seedling | wt | 0.61 | MC |
| SRR358792 | seedling | wt | 1.49 | MC |
| SRR358793 | seedling | wt | 1.05 | MC |
| SRR358794 | seedling | wt | 1.31 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.47 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.79 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.81 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.26 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.90 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.01 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.56 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.00 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.10 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.29 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.91 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.32 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.51 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.89 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.04 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.48 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.04 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.30 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.61 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.94 | MC |