| SRR5560727 | caryopsis | wild_type | 4.78 | MC |
| SRR5560728 | caryopsis | wild_type | 1.10 | MC |
| SRR5560729 | caryopsis | wild_type | 1.04 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.11 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.59 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.26 | MC |
| SRR7265403 | coleoptile | 2dN | 0.34 | MC |
| SRR7265405 | coleoptile | 2dN | 0.65 | MC |
| SRR7265417 | coleoptile | 4dN | 0.50 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.03 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR7265397 | embryo | 24hN | 0.81 | MC |
| SRR2338867 | endosprem | control | 0.46 | MC |
| SRR8240818 | leaf | wild_type | 1.86 | MC |
| SRR8240819 | leaf | wild_type | 2.39 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.31 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.50 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.17 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.67 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.85 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.70 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.60 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.09 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.05 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.52 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.58 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.68 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.93 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.37 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.90 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.21 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.56 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.81 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.45 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.29 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.64 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.19 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.74 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.73 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.15 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.87 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.81 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.82 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.18 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.14 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.33 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.88 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.61 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.40 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.79 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.80 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.88 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.71 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.80 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.88 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.71 | MC |
| SRR1761528 | leaf | drought | 4.80 | MC |
| SRR1761529 | leaf | drought | 1.88 | MC |
| SRR1761530 | leaf | control | 0.71 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.96 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.60 | MC |
| SRR6417968 | leaf | H2O_control | 1.28 | MC |
| SRR6417969 | leaf | H2O_control | 2.45 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.63 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.49 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.36 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.74 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.82 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.48 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.30 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.90 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.10 | MC |
| SRR1213692 | leaf | wt | 3.31 | MC |
| SRR1213693 | leaf | wt | 3.14 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502088 | leaf | control | 2.47 | MC |
| SRR6502089 | leaf | control | 2.53 | MC |
| SRR6502090 | leaf | control | 1.46 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.46 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.80 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.77 | MC |
| SRR6502100 | leaf | control | 2.68 | MC |
| SRR6502101 | leaf | control | 0.96 | MC |
| SRR6502102 | leaf | control | 0.50 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.95 | MC |
| SRR8582891 | panicle | PM | 0.68 | MC |
| SRR8582893 | panicle | PM | 0.95 | MC |
| SRR4947496 | root | control | 0.85 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.13 | MC |
| SRR5126147 | root | "mock,1_day" | 0.60 | MC |
| SRR5126149 | root | "mock,1_day" | 0.65 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.99 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.89 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126153 | root | "mock,7_days" | 0.66 | MC |
| SRR5126155 | root | "mock,7_days" | 2.22 | MC |
| SRR5126157 | root | "mock,7_days" | 1.23 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.83 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.85 | MC |
| SRR5126165 | root | "mock,14_days" | 0.50 | MC |
| SRR5126167 | root | "mock,14_days" | 1.11 | MC |
| SRR5126169 | root | "mock,14_days" | 2.64 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.09 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.82 | MC |
| SRR1213695 | root | wt | 3.19 | MC |
| SRR4947481 | root | control | 0.63 | MC |
| SRR4947485 | root | Al | 1.18 | MC |
| SRR4947488 | root | control | 0.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.92 | MC |
| SRR6502094 | root | control | 1.20 | MC |
| SRR6502095 | root | control | 1.26 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502107 | root | control | 1.03 | MC |
| SRR6502108 | root | control | 0.70 | MC |
| SRR6441554 | seedling | wild_type | 0.24 | MC |
| SRR6441555 | seedling | wild_type | 0.58 | MC |
| SRR2154086 | seedling | wt | 1.63 | MC |
| SRR2154084 | seedling | wt | 2.00 | MC |
| SRR2154085 | seedling | wt | 2.77 | MC |
| SRR2154087 | seedling | wt | 1.76 | MC |
| SRR3098741 | seedling | wt | 2.54 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.89 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.23 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.67 | MC |
| SRR1944583 | seedling | no_treatment | 0.43 | MC |
| SRR358791 | seedling | wt | 1.45 | MC |
| SRR358792 | seedling | wt | 1.60 | MC |
| SRR358793 | seedling | wt | 1.68 | MC |
| SRR358794 | seedling | wt | 1.93 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.81 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.64 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.24 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.80 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.22 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.25 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.78 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.74 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.74 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.21 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.35 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.57 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.21 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.68 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.71 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.57 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.45 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.62 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.54 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.62 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.39 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.67 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.64 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.27 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.90 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.69 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.32 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.54 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.64 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.39 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.93 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.57 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.20 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.92 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.90 | MC |