| SRR4457250 | 2nd_leaf | DAH4 | 2.90 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.53 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.49 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.80 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.95 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 4.17 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.61 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.55 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.83 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.07 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.01 | MC |
| SRR6320498 | carpel | wt | 2.15 | MC |
| SRR5560727 | caryopsis | wild_type | 2.64 | MC |
| SRR5560728 | caryopsis | wild_type | 3.10 | MC |
| SRR5560729 | caryopsis | wild_type | 2.37 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.65 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.91 | MC |
| SRR4947495 | root | control | 0.50 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.81 | MC |
| SRR7265400 | coleoptile | 2dA | 2.74 | MC |
| SRR7265402 | coleoptile | 2dA | 3.53 | MC |
| SRR7265404 | coleoptile | 2dN | 3.23 | MC |
| SRR7265407 | coleoptile | 3dA | 2.89 | MC |
| SRR7265408 | coleoptile | 3dA | 1.09 | MC |
| SRR7265409 | coleoptile | 3dN | 3.26 | MC |
| SRR7265412 | coleoptile | 4dA | 1.78 | MC |
| SRR7265413 | coleoptile | 4dA | 2.34 | MC |
| SRR7265414 | coleoptile | 4dA | 0.98 | MC |
| SRR7265415 | coleoptile | 4dN | 4.14 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.45 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 4.08 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.17 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.98 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.20 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.39 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.47 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.10 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.85 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.52 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.34 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.46 | MC |
| SRR7265376 | embryo | 1hA | 2.85 | MC |
| SRR7265379 | embryo | 1hN | 2.64 | MC |
| SRR7265381 | embryo | 1hN | 3.12 | MC |
| SRR7265385 | embryo | 3hN | 3.76 | MC |
| SRR7265388 | embryo | 12hA | 3.29 | MC |
| SRR7265389 | embryo | 12hA | 3.71 | MC |
| SRR7265390 | embryo | 12hA | 4.08 | MC |
| SRR7265392 | embryo | 12hN | 2.37 | MC |
| SRR7265395 | embryo | 24hA | 2.09 | MC |
| SRR7265396 | embryo | 24hA | 2.92 | MC |
| SRR2338868 | endosprem | high_temperature | 0.81 | MC |
| SRR2338869 | endosprem | high_temperature | 1.18 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.43 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.44 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.55 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.46 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.62 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.41 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.60 | MC |
| SRR1213691 | flower | wt | 1.92 | MC |
| SRR8240819 | leaf | wild_type | 1.12 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.95 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.63 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.88 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.66 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.95 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.17 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.36 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.68 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.46 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.48 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.34 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.13 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.03 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.51 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.64 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.16 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.26 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.96 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.26 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.68 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.38 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.37 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.21 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.80 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.95 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.50 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.80 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.95 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.50 | MC |
| SRR1761528 | leaf | drought | 3.80 | MC |
| SRR1761530 | leaf | control | 1.95 | MC |
| SRR1761531 | leaf | control | 0.50 | MC |
| SRR504365 | leaf | wt | 0.66 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR6417967 | leaf | H2O_control | 0.52 | MC |
| SRR6417968 | leaf | H2O_control | 2.62 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.98 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.89 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.17 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.02 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.96 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.04 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.23 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.75 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.52 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.07 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.93 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.16 | MC |
| SRR1213692 | leaf | wt | 2.65 | MC |
| SRR1213693 | leaf | wt | 2.32 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.34 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.57 | MC |
| SRR6502088 | leaf | control | 2.11 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.44 | MC |
| SRR6502100 | leaf | control | 3.82 | MC |
| SRR5856928 | leaf | control | 1.11 | MC |
| SRR5856929 | leaf | control | 1.51 | MC |
| SRR5856930 | leaf | salt | 1.11 | MC |
| SRR5856931 | leaf | salt | 1.14 | MC |
| SRR5856932 | leaf | salt | 0.47 | MC |
| SRR5856933 | leaf | control | 1.34 | MC |
| SRR5856936 | leaf | salt | 1.45 | MC |
| SRR6168973 | leaf | none (control) | 1.08 | MC |
| SRR6168974 | leaf | none (control) | 2.51 | MC |
| SRR6168975 | leaf | none (control) | 1.33 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.42 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR6168981 | leaf | none (control) | 1.95 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.34 | MC |
| SRR8582888 | panicle | AM | 2.01 | MC |
| SRR8582889 | panicle | AM | 1.22 | MC |
| SRR8582890 | panicle | AM | 0.19 | MC |
| SRR8582891 | panicle | PM | 3.93 | MC |
| SRR5110429 | panicle | Dawn | 2.70 | MC |
| SRR5110431 | panicle | Dawn | 1.39 | MC |
| SRR5110432 | panicle | Dawn | 0.46 | MC |
| SRR4947496 | root | control | 1.10 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.06 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.45 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.90 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.01 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.70 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.37 | MC |
| SRR5110445 | panicle | Dusk | 0.52 | MC |
| SRR5110446 | panicle | Dusk | 2.95 | MC |
| SRR5110447 | panicle | Dusk | 0.86 | MC |
| SRR5110448 | panicle | Dusk | 1.98 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.63 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.94 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.69 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.23 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.52 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.64 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.65 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.58 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.20 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.04 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.79 | MC |
| SRR5126153 | root | "mock,7_days" | 2.72 | MC |
| SRR5126157 | root | "mock,7_days" | 5.19 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.89 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.86 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.13 | MC |
| SRR5126169 | root | "mock,14_days" | 3.78 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.52 | MC |
| SRR1213694 | root | wt | 1.46 | MC |
| SRR1213695 | root | wt | 2.07 | MC |
| SRR4947480 | root | control | 0.71 | MC |
| SRR4947485 | root | Al | 2.72 | MC |
| SRR4947487 | root | control | 0.77 | MC |
| SRR4947489 | root | control | 0.58 | MC |
| SRR4947490 | root | Al | 1.47 | MC |
| SRR4947491 | root | Al | 2.07 | MC |
| SRR4947493 | root | Al | 0.95 | MC |
| SRR4947497 | root | control | 1.02 | MC |
| SRR4947498 | root | Al | 0.97 | MC |
| SRR4947499 | root | Al | 1.20 | MC |
| SRR4947502 | root | control | 0.97 | MC |
| SRR4947504 | root | control | 0.65 | MC |
| SRR4947505 | root | control | 3.11 | MC |
| SRR4947507 | root | Al | 1.94 | MC |
| SRR4947509 | root | Al | 3.16 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.47 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.56 | MC |
| SRR6502096 | root | control | 2.44 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.27 | MC |
| SRR6502106 | root | control | 2.15 | MC |
| SRR6502108 | root | control | 1.95 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.27 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.71 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.79 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.27 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.07 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.85 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.80 | MC |
| SRR6441554 | seedling | wild_type | 1.46 | MC |
| SRR6441555 | seedling | wild_type | 0.69 | MC |
| SRR2154086 | seedling | wt | 3.78 | MC |
| SRR2154082 | seedling | wt | 0.61 | MC |
| SRR2154083 | seedling | wt | 3.04 | MC |
| SRR2154084 | seedling | wt | 1.23 | MC |
| SRR2154085 | seedling | wt | 1.23 | MC |
| SRR3098742 | seedling | wt | 1.50 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.47 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.26 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.95 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.45 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.07 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.82 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.79 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.38 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.11 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.32 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.58 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.98 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.87 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.26 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.11 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.91 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.92 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.78 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.14 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.51 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.98 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.82 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.46 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.78 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.47 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.26 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.70 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.85 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 4.16 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.52 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.91 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.87 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.03 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.88 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.26 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |