| SRR4457249 | 2nd_leaf | DAH4 | 3.12 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.79 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.27 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.30 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.90 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.52 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.98 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.83 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.15 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.15 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.29 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.19 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.87 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.79 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.29 | MC |
| SRR3745125 | anther | wt | 1.11 | MC |
| SRR3745126 | anther | wt | 1.95 | MC |
| SRR3745127 | anther | wt | 3.00 | MC |
| SRR358795 | callus | wt | 1.98 | MC |
| SRR358796 | callus | wt | 3.62 | MC |
| SRR358798 | callus | wt | 1.09 | MC |
| SRR5560727 | caryopsis | wild_type | 2.27 | MC |
| SRR5560728 | caryopsis | wild_type | 0.95 | MC |
| SRR5560729 | caryopsis | wild_type | 2.14 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.40 | MC |
| SRR4947495 | root | control | 0.65 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.05 | MC |
| SRR7265400 | coleoptile | 2dA | 0.64 | MC |
| SRR7265401 | coleoptile | 2dA | 0.78 | MC |
| SRR7265402 | coleoptile | 2dA | 0.65 | MC |
| SRR7265403 | coleoptile | 2dN | 0.58 | MC |
| SRR7265405 | coleoptile | 2dN | 0.66 | MC |
| SRR7265409 | coleoptile | 3dN | 0.47 | MC |
| SRR7265410 | coleoptile | 3dN | 0.51 | MC |
| SRR7265416 | coleoptile | 4dN | 0.56 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.19 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.60 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.58 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.90 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.07 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265376 | embryo | 1hA | 2.78 | MC |
| SRR7265377 | embryo | 1hA | 2.35 | MC |
| SRR7265378 | embryo | 1hA | 2.06 | MC |
| SRR7265379 | embryo | 1hN | 1.64 | MC |
| SRR7265380 | embryo | 1hN | 1.92 | MC |
| SRR7265381 | embryo | 1hN | 2.19 | MC |
| SRR7265382 | embryo | 3hA | 2.11 | MC |
| SRR7265383 | embryo | 3hA | 2.74 | MC |
| SRR7265384 | embryo | 3hA | 1.58 | MC |
| SRR7265385 | embryo | 3hN | 2.77 | MC |
| SRR7265386 | embryo | 3hN | 2.23 | MC |
| SRR7265387 | embryo | 3hN | 1.95 | MC |
| SRR7265388 | embryo | 12hA | 0.62 | MC |
| SRR7265393 | embryo | 12hN | 0.48 | MC |
| SRR7265394 | embryo | 24hA | 0.97 | MC |
| SRR7265395 | embryo | 24hA | 0.69 | MC |
| SRR7265396 | embryo | 24hA | 0.73 | MC |
| SRR7265397 | embryo | 24hN | 0.51 | MC |
| SRR7265398 | embryo | 24hN | 0.50 | MC |
| SRR7265399 | embryo | 24hN | 0.86 | MC |
| SRR2338866 | endosprem | control | 1.39 | MC |
| SRR2338867 | endosprem | control | 0.97 | MC |
| SRR2338868 | endosprem | high_temperature | 1.92 | MC |
| SRR2338869 | endosprem | high_temperature | 3.19 | MC |
| SRR976168 | flag_leaf | wild_type | 0.65 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.35 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.62 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.26 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.65 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.78 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.60 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.64 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.74 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.52 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.61 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.66 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.31 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.68 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.47 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.78 | MC |
| SRR1213691 | flower | wt | 1.43 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.57 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.46 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.46 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.74 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.96 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.29 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.03 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.45 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.67 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.56 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.20 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.28 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.89 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.97 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.90 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.42 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.78 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.07 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.55 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.10 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.10 | MC |
| SRR1761531 | leaf | control | 5.10 | MC |
| SRR1213692 | leaf | wt | 1.18 | MC |
| SRR1213693 | leaf | wt | 1.90 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.88 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.94 | MC |
| SRR6168973 | leaf | none (control) | 1.55 | MC |
| SRR6168974 | leaf | none (control) | 2.94 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.90 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.93 | MC |
| SRR8582888 | panicle | AM | 1.66 | MC |
| SRR8582889 | panicle | AM | 1.55 | MC |
| SRR8582890 | panicle | AM | 2.32 | MC |
| SRR8582891 | panicle | PM | 1.57 | MC |
| SRR8582892 | panicle | PM | 1.22 | MC |
| SRR8582893 | panicle | PM | 2.64 | MC |
| SRR5110429 | panicle | Dawn | 2.31 | MC |
| SRR5110430 | panicle | Dawn | 2.34 | MC |
| SRR5110431 | panicle | Dawn | 1.74 | MC |
| SRR5110432 | panicle | Dawn | 0.96 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.69 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.13 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.15 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.09 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.81 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.06 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.25 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.45 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.26 | MC |
| SRR5110445 | panicle | Dusk | 1.13 | MC |
| SRR5110446 | panicle | Dusk | 0.42 | MC |
| SRR5110447 | panicle | Dusk | 0.48 | MC |
| SRR5110448 | panicle | Dusk | 0.82 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.73 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.36 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.82 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.95 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.71 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.16 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.15 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.14 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.40 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.51 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.77 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.56 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.56 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.83 | MC |
| SRR1633182 | panicle | WT | 2.60 | MC |
| SRR1633185 | panicle | WT | 1.65 | MC |
| SRR1213694 | root | wt | 1.12 | MC |
| SRR1213695 | root | wt | 1.42 | MC |
| SRR4947478 | root | control | 4.54 | MC |
| SRR4947479 | root | control | 2.24 | MC |
| SRR4947480 | root | control | 4.33 | MC |
| SRR4947481 | root | control | 4.47 | MC |
| SRR4947482 | root | Al | 1.46 | MC |
| SRR4947483 | root | Al | 3.85 | MC |
| SRR4947484 | root | Al | 3.34 | MC |
| SRR4947485 | root | Al | 4.86 | MC |
| SRR4947487 | root | control | 3.85 | MC |
| SRR4947488 | root | control | 4.13 | MC |
| SRR4947489 | root | control | 3.51 | MC |
| SRR4947490 | root | Al | 3.90 | MC |
| SRR4947492 | root | Al | 3.76 | MC |
| SRR4947494 | root | control | 3.61 | MC |
| SRR4947497 | root | control | 1.31 | MC |
| SRR4947500 | root | Al | 1.01 | MC |
| SRR4947502 | root | control | 0.51 | MC |
| SRR4947503 | root | control | 1.45 | MC |
| SRR4947504 | root | control | 3.20 | MC |
| SRR4947505 | root | control | 2.33 | MC |
| SRR4947506 | root | Al | 2.59 | MC |
| SRR4947507 | root | Al | 0.59 | MC |
| SRR4947508 | root | Al | 3.40 | MC |
| SRR4947509 | root | Al | 3.99 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.67 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.02 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.71 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.74 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.67 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.31 | MC |
| SRR2154086 | seedling | wt | 2.77 | MC |
| SRR2154082 | seedling | wt | 1.59 | MC |
| SRR2154083 | seedling | wt | 1.92 | MC |
| SRR2154084 | seedling | wt | 2.16 | MC |
| SRR2154085 | seedling | wt | 2.15 | MC |
| SRR2154087 | seedling | wt | 1.44 | MC |
| SRR358791 | seedling | wt | 2.04 | MC |
| SRR358792 | seedling | wt | 2.61 | MC |
| SRR358793 | seedling | wt | 0.51 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.07 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.17 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.39 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.78 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.02 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.78 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.57 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.62 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.28 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.37 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.86 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.14 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.93 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.34 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.62 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.83 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.57 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.52 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.07 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.44 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.66 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.09 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.14 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.90 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.65 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.10 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.56 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.83 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.96 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.17 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.84 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.13 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.41 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.48 | MC |