| SRR4457249 | 2nd_leaf | DAH4 | 4.29 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.10 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.36 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.72 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.92 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.58 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.17 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.49 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.83 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.99 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.68 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.66 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.65 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.94 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.36 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.12 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.97 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.14 | MC |
| SRR358796 | callus | wt | 4.60 | MC |
| SRR358798 | callus | wt | 2.68 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.01 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.03 | MC |
| SRR4947495 | root | control | 4.22 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.50 | MC |
| SRR7265378 | embryo | 1hA | 0.67 | MC |
| SRR7265381 | embryo | 1hN | 0.75 | MC |
| SRR2338868 | endosprem | high_temperature | 1.58 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.11 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.07 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.76 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.05 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.30 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.48 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.88 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.95 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.14 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.96 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.58 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.93 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.89 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.72 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.99 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.68 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.13 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.49 | MC |
| SRR1213691 | flower | wt | 0.99 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.19 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.01 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.51 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.89 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.97 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.36 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.54 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.77 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.37 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.52 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.19 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.32 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.22 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.25 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.31 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.56 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.77 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.49 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.18 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.78 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.77 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.86 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.36 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.35 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.97 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.91 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.57 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.93 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.02 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.95 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.02 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.95 | MC |
| SRR1761530 | leaf | control | 3.02 | MC |
| SRR1761531 | leaf | control | 3.95 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.38 | MC |
| SRR6417967 | leaf | H2O_control | 0.77 | MC |
| SRR6417968 | leaf | H2O_control | 2.64 | MC |
| SRR6417969 | leaf | H2O_control | 1.06 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.86 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.04 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 4.18 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.02 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.59 | MC |
| SRR1213692 | leaf | wt | 0.74 | MC |
| SRR1213693 | leaf | wt | 0.88 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.62 | MC |
| SRR6502100 | leaf | control | 3.86 | MC |
| SRR8582888 | panicle | AM | 1.69 | MC |
| SRR8582890 | panicle | AM | 2.27 | MC |
| SRR8582892 | panicle | PM | 5.41 | MC |
| SRR5110429 | panicle | Dawn | 1.23 | MC |
| SRR5110430 | panicle | Dawn | 2.18 | MC |
| SRR5110431 | panicle | Dawn | 1.46 | MC |
| SRR5110432 | panicle | Dawn | 2.30 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.19 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.24 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.75 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.35 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.65 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.28 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.82 | MC |
| SRR5110445 | panicle | Dusk | 1.73 | MC |
| SRR5110446 | panicle | Dusk | 2.99 | MC |
| SRR5110448 | panicle | Dusk | 1.27 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.57 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.64 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.13 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.03 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.98 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.01 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.62 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.64 | MC |
| SRR1213694 | root | wt | 0.92 | MC |
| SRR1213695 | root | wt | 0.53 | MC |
| SRR4947479 | root | control | 3.98 | MC |
| SRR4947490 | root | Al | 3.71 | MC |
| SRR4947491 | root | Al | 4.72 | MC |
| SRR4947492 | root | Al | 3.87 | MC |
| SRR4947494 | root | control | 3.07 | MC |
| SRR4947497 | root | control | 5.68 | MC |
| SRR4947498 | root | Al | 4.95 | MC |
| SRR4947499 | root | Al | 3.70 | MC |
| SRR4947500 | root | Al | 3.68 | MC |
| SRR4947501 | root | Al | 3.08 | MC |
| SRR4947503 | root | control | 2.91 | MC |
| SRR4947504 | root | control | 4.33 | MC |
| SRR4947507 | root | Al | 2.52 | MC |
| SRR4947508 | root | Al | 4.34 | MC |
| SRR4947509 | root | Al | 3.88 | MC |
| SRR6502108 | root | control | 4.24 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.61 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.09 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.57 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.36 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.24 | MC |
| SRR2154082 | seedling | wt | 0.37 | MC |
| SRR2154083 | seedling | wt | 0.41 | MC |
| SRR2154087 | seedling | wt | 0.51 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.71 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.95 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.01 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.96 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.12 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.22 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.96 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.33 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.13 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.88 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.06 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.07 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.57 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.47 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.65 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.52 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.78 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.53 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.19 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.81 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.89 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.94 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.38 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.74 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.87 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.49 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.60 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.94 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.88 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.10 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.21 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.30 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.11 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.75 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.97 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.57 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.51 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.39 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.55 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.82 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.62 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.71 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.92 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.82 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.85 | MC |