| SRR4457252 | 2nd_leaf | DAH12 | 2.02 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.88 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.60 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.14 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.62 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.99 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.50 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.61 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.03 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.72 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.99 | MC |
| SRR3745125 | anther | wt | 1.38 | MC |
| SRR3745127 | anther | wt | 2.03 | MC |
| SRR358796 | callus | wt | 5.98 | MC |
| SRR5560728 | caryopsis | wild_type | 0.27 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.33 | MC |
| SRR7265400 | coleoptile | 2dA | 0.56 | MC |
| SRR7265401 | coleoptile | 2dA | 2.22 | MC |
| SRR7265402 | coleoptile | 2dA | 0.49 | MC |
| SRR7265403 | coleoptile | 2dN | 2.34 | MC |
| SRR7265404 | coleoptile | 2dN | 1.69 | MC |
| SRR7265405 | coleoptile | 2dN | 0.57 | MC |
| SRR7265406 | coleoptile | 3dA | 0.48 | MC |
| SRR7265407 | coleoptile | 3dA | 0.40 | MC |
| SRR7265409 | coleoptile | 3dN | 0.36 | MC |
| SRR7265410 | coleoptile | 3dN | 1.04 | MC |
| SRR7265411 | coleoptile | 3dN | 0.56 | MC |
| SRR7265414 | coleoptile | 4dA | 1.76 | MC |
| SRR7265415 | coleoptile | 4dN | 1.01 | MC |
| SRR7265416 | coleoptile | 4dN | 0.86 | MC |
| SRR7265417 | coleoptile | 4dN | 2.77 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.48 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.49 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.01 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.88 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.52 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.08 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265378 | embryo | 1hA | 2.96 | MC |
| SRR7265379 | embryo | 1hN | 0.56 | MC |
| SRR7265383 | embryo | 3hA | 1.29 | MC |
| SRR7265389 | embryo | 12hA | 0.49 | MC |
| SRR7265391 | embryo | 12hN | 1.07 | MC |
| SRR7265393 | embryo | 12hN | 1.23 | MC |
| SRR7265396 | embryo | 24hA | 0.80 | MC |
| SRR7265397 | embryo | 24hN | 1.04 | MC |
| SRR976168 | flag_leaf | wild_type | 1.63 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.31 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.71 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.32 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.96 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.36 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.85 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.53 | MC |
| SRR8240824 | leaf | wild_type | 0.84 | MC |
| SRR8240825 | leaf | wild_type | 0.37 | MC |
| SRR8240826 | leaf | wild_type | 0.23 | MC |
| SRR8240819 | leaf | wild_type | 0.33 | MC |
| SRR8240820 | leaf | wild_type | 0.56 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.79 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.01 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.40 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.55 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.89 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.91 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.29 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.62 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.46 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.60 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.37 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.78 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.47 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.12 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.78 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.47 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.12 | MC |
| SRR1761528 | leaf | drought | 3.78 | MC |
| SRR1761530 | leaf | control | 2.47 | MC |
| SRR1761531 | leaf | control | 4.12 | MC |
| SRR504365 | leaf | wt | 3.16 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.75 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.94 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.76 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.48 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.70 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 3.24 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.60 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.50 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.44 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR1213692 | leaf | wt | 0.36 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.44 | MC |
| SRR6502090 | leaf | control | 1.61 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.66 | MC |
| SRR6502100 | leaf | control | 1.50 | MC |
| SRR6502101 | leaf | control | 3.36 | MC |
| SRR6502102 | leaf | control | 2.68 | MC |
| SRR5856929 | leaf | control | 0.16 | MC |
| SRR5856930 | leaf | salt | 1.37 | MC |
| SRR5856936 | leaf | salt | 0.49 | MC |
| SRR5856937 | leaf | salt | 0.24 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.72 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.53 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 6.15 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.86 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.58 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.18 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.02 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.59 | MC |
| SRR6168973 | leaf | none (control) | 0.35 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.24 | MC |
| SRR6168979 | leaf | none (control) | 0.74 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.87 | MC |
| SRR8582893 | panicle | PM | 0.40 | MC |
| SRR5110429 | panicle | Dawn | 2.96 | MC |
| SRR5110431 | panicle | Dawn | 0.87 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.80 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.09 | MC |
| SRR5110447 | panicle | Dusk | 2.59 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.48 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.47 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.04 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.66 | MC |
| SRR5126147 | root | "mock,1_day" | 0.69 | MC |
| SRR5126148 | root | "mock,1_day" | 0.78 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.24 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.07 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.27 | MC |
| SRR5126153 | root | "mock,7_days" | 1.15 | MC |
| SRR5126155 | root | "mock,7_days" | 0.82 | MC |
| SRR5126157 | root | "mock,7_days" | 0.68 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.65 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.84 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.04 | MC |
| SRR5126165 | root | "mock,14_days" | 1.76 | MC |
| SRR5126167 | root | "mock,14_days" | 0.66 | MC |
| SRR5126169 | root | "mock,14_days" | 2.03 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.87 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.82 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.71 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.59 | MC |
| SRR1213694 | root | wt | 0.32 | MC |
| SRR1213695 | root | wt | 2.64 | MC |
| SRR4947479 | root | control | 2.62 | MC |
| SRR4947480 | root | control | 2.76 | MC |
| SRR4947481 | root | control | 1.55 | MC |
| SRR4947485 | root | Al | 0.80 | MC |
| SRR4947488 | root | control | 0.92 | MC |
| SRR4947491 | root | Al | 2.88 | MC |
| SRR4947497 | root | control | 1.33 | MC |
| SRR4947500 | root | Al | 0.83 | MC |
| SRR4947501 | root | Al | 2.48 | MC |
| SRR4947502 | root | control | 0.57 | MC |
| SRR4947503 | root | control | 1.05 | MC |
| SRR4947507 | root | Al | 1.00 | MC |
| SRR4947508 | root | Al | 3.15 | MC |
| SRR4947509 | root | Al | 2.08 | MC |
| SRR6502094 | root | control | 3.80 | MC |
| SRR6502095 | root | control | 3.80 | MC |
| SRR6502096 | root | control | 0.79 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.54 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.82 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.48 | MC |
| SRR6502106 | root | control | 3.87 | MC |
| SRR6502107 | root | control | 0.58 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.16 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.42 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.17 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.25 | MC |
| SRR6441555 | seedling | wild_type | 0.31 | MC |
| SRR2154086 | seedling | wt | 1.74 | MC |
| SRR2154084 | seedling | wt | 1.07 | MC |
| SRR2154085 | seedling | wt | 1.56 | MC |
| SRR3098741 | seedling | wt | 1.32 | MC |
| SRR3098742 | seedling | wt | 0.42 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.47 | MC |
| SRR1944583 | seedling | no_treatment | 3.60 | MC |
| SRR358793 | seedling | wt | 5.11 | MC |
| SRR358794 | seedling | wt | 5.18 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.01 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.52 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.39 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.76 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.96 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.84 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.75 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.18 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.82 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.07 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.31 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.70 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.96 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.22 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.13 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.78 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.49 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.06 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.93 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.75 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.85 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.73 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.21 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.51 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.46 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.14 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.50 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.39 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.53 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.82 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.89 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.35 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.26 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.85 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.09 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 14.52 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.28 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.85 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.78 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.35 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.75 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.99 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |