| SRR4457250 | 2nd_leaf | DAH4 | 4.39 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.08 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.66 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.79 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.88 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.98 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.86 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.59 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.40 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.43 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.87 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.51 | MC |
| SRR3745125 | anther | wt | 0.63 | MC |
| SRR3745126 | anther | wt | 0.84 | MC |
| SRR3745127 | anther | wt | 4.87 | MC |
| SRR6320473 | carpel | wt | 1.45 | MC |
| SRR5560728 | caryopsis | wild_type | 2.07 | MC |
| SRR5560729 | caryopsis | wild_type | 2.69 | MC |
| SRR4947495 | root | control | 1.04 | MC |
| SRR7265400 | coleoptile | 2dA | 2.10 | MC |
| SRR7265401 | coleoptile | 2dA | 1.47 | MC |
| SRR7265402 | coleoptile | 2dA | 1.82 | MC |
| SRR7265403 | coleoptile | 2dN | 0.85 | MC |
| SRR7265404 | coleoptile | 2dN | 0.96 | MC |
| SRR7265405 | coleoptile | 2dN | 1.07 | MC |
| SRR7265406 | coleoptile | 3dA | 2.55 | MC |
| SRR7265407 | coleoptile | 3dA | 2.67 | MC |
| SRR7265408 | coleoptile | 3dA | 2.28 | MC |
| SRR7265409 | coleoptile | 3dN | 1.02 | MC |
| SRR7265410 | coleoptile | 3dN | 0.91 | MC |
| SRR7265411 | coleoptile | 3dN | 1.29 | MC |
| SRR7265412 | coleoptile | 4dA | 1.15 | MC |
| SRR7265413 | coleoptile | 4dA | 3.37 | MC |
| SRR7265414 | coleoptile | 4dA | 1.16 | MC |
| SRR7265415 | coleoptile | 4dN | 1.47 | MC |
| SRR7265416 | coleoptile | 4dN | 2.01 | MC |
| SRR7265417 | coleoptile | 4dN | 1.78 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.36 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.52 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.24 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.83 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.62 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.69 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.28 | MC |
| SRR7265376 | embryo | 1hA | 0.47 | MC |
| SRR7265378 | embryo | 1hA | 0.74 | MC |
| SRR7265379 | embryo | 1hN | 0.42 | MC |
| SRR7265380 | embryo | 1hN | 0.61 | MC |
| SRR7265381 | embryo | 1hN | 0.33 | MC |
| SRR7265384 | embryo | 3hA | 0.35 | MC |
| SRR7265386 | embryo | 3hN | 0.37 | MC |
| SRR7265387 | embryo | 3hN | 0.72 | MC |
| SRR7265388 | embryo | 12hA | 0.43 | MC |
| SRR7265394 | embryo | 24hA | 0.63 | MC |
| SRR7265395 | embryo | 24hA | 0.48 | MC |
| SRR7265396 | embryo | 24hA | 0.79 | MC |
| SRR7265399 | embryo | 24hN | 0.80 | MC |
| SRR2338866 | endosprem | control | 1.25 | MC |
| SRR2338868 | endosprem | high_temperature | 0.73 | MC |
| SRR976168 | flag_leaf | wild_type | 3.09 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.35 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.12 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.02 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.95 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.12 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.58 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.92 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.36 | MC |
| SRR1213691 | flower | wt | 1.21 | MC |
| SRR8060835 | leaf | wild_type | 1.24 | MC |
| SRR8060837 | leaf | wild_type | 1.11 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.27 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.53 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.14 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.55 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.41 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.24 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.67 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.58 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.95 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.15 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.80 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.85 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.75 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.42 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.99 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.25 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.49 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.55 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.67 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.43 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.59 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.67 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.59 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.67 | MC |
| SRR1761528 | leaf | drought | 1.59 | MC |
| SRR1761529 | leaf | drought | 3.67 | MC |
| SRR504365 | leaf | wt | 3.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.34 | MC |
| SRR6417968 | leaf | H2O_control | 3.28 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.57 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.44 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.16 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.68 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.92 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.40 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.97 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.00 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.46 | MC |
| SRR1213692 | leaf | wt | 3.49 | MC |
| SRR1213693 | leaf | wt | 0.36 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.91 | MC |
| SRR6168973 | leaf | none (control) | 4.03 | MC |
| SRR6168974 | leaf | none (control) | 4.47 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.95 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.43 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.65 | MC |
| SRR6168979 | leaf | none (control) | 0.39 | MC |
| SRR6168980 | leaf | none (control) | 0.53 | MC |
| SRR8582893 | panicle | PM | 1.43 | MC |
| SRR4947496 | root | control | 0.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.31 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.31 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.44 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.77 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.85 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.20 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.80 | MC |
| SRR5126147 | root | "mock,1_day" | 0.30 | MC |
| SRR5126148 | root | "mock,1_day" | 0.28 | MC |
| SRR5126153 | root | "mock,7_days" | 0.56 | MC |
| SRR5126155 | root | "mock,7_days" | 1.03 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.68 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.33 | MC |
| SRR5126165 | root | "mock,14_days" | 0.56 | MC |
| SRR5126167 | root | "mock,14_days" | 1.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.29 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.65 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.07 | MC |
| SRR1213694 | root | wt | 2.92 | MC |
| SRR1213695 | root | wt | 1.09 | MC |
| SRR4947478 | root | control | 0.95 | MC |
| SRR4947479 | root | control | 1.11 | MC |
| SRR4947482 | root | Al | 2.71 | MC |
| SRR4947483 | root | Al | 2.29 | MC |
| SRR4947484 | root | Al | 0.88 | MC |
| SRR4947485 | root | Al | 2.04 | MC |
| SRR4947487 | root | control | 1.20 | MC |
| SRR4947488 | root | control | 0.60 | MC |
| SRR4947489 | root | control | 0.45 | MC |
| SRR4947490 | root | Al | 2.41 | MC |
| SRR4947491 | root | Al | 3.28 | MC |
| SRR4947492 | root | Al | 0.81 | MC |
| SRR4947493 | root | Al | 0.73 | MC |
| SRR4947494 | root | control | 0.84 | MC |
| SRR4947497 | root | control | 0.60 | MC |
| SRR4947498 | root | Al | 3.89 | MC |
| SRR4947499 | root | Al | 3.50 | MC |
| SRR4947500 | root | Al | 1.99 | MC |
| SRR4947501 | root | Al | 1.46 | MC |
| SRR4947502 | root | control | 1.74 | MC |
| SRR4947503 | root | control | 1.28 | MC |
| SRR4947504 | root | control | 1.13 | MC |
| SRR4947505 | root | control | 0.50 | MC |
| SRR4947506 | root | Al | 0.72 | MC |
| SRR4947507 | root | Al | 1.11 | MC |
| SRR4947508 | root | Al | 2.23 | MC |
| SRR4947509 | root | Al | 1.99 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.70 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.81 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.51 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.50 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.96 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.35 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.09 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.30 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.02 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.29 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.42 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.40 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.50 | MC |
| SRR358793 | seedling | wt | 5.13 | MC |
| SRR358794 | seedling | wt | 5.75 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.84 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.47 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.00 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.83 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.49 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.12 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.54 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.53 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.90 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.46 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.25 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.24 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.89 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.30 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.35 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.98 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.92 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.52 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.15 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.23 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.69 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.43 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.32 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.06 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.39 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.94 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.04 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.07 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.48 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.75 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.63 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.93 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.84 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.65 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.70 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.38 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.70 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.59 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.97 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.74 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.81 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.02 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.89 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.82 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.17 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.58 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.68 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.46 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.45 | MC |