| SRR3745125 | anther | wt | 0.57 | MC |
| SRR3745127 | anther | wt | 2.55 | MC |
| SRR358797 | callus | wt | 6.09 | MC |
| SRR358798 | callus | wt | 2.55 | MC |
| SRR6320473 | carpel | wt | 4.32 | MC |
| SRR5560727 | caryopsis | wild_type | 3.98 | MC |
| SRR5560729 | caryopsis | wild_type | 2.72 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.28 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.91 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.34 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.51 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.18 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.61 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.39 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.27 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.71 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.39 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.31 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.94 | MC |
| SRR2338866 | endosprem | control | 2.81 | MC |
| SRR8060835 | leaf | wild_type | 2.53 | MC |
| SRR8060836 | leaf | wild_type | 2.40 | MC |
| SRR8060837 | leaf | wild_type | 0.80 | MC |
| SRR8240824 | leaf | wild_type | 2.70 | MC |
| SRR8240818 | leaf | wild_type | 1.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.26 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.12 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.33 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.35 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.67 | MC |
| SRR504365 | leaf | wt | 0.54 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.70 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.82 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.01 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.05 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.12 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.66 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.02 | MC |
| SRR1213692 | leaf | wt | 3.37 | MC |
| SRR6502088 | leaf | control | 3.83 | MC |
| SRR5856927 | leaf | control | 1.84 | MC |
| SRR5856928 | leaf | control | 1.16 | MC |
| SRR5856929 | leaf | control | 1.33 | MC |
| SRR5856930 | leaf | salt | 0.97 | MC |
| SRR5856932 | leaf | salt | 1.16 | MC |
| SRR5856934 | leaf | control | 1.70 | MC |
| SRR5856936 | leaf | salt | 1.18 | MC |
| SRR5856937 | leaf | salt | 0.99 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.36 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.47 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.37 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 8.44 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.11 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.87 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.77 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 7.23 | MC |
| SRR6168973 | leaf | none (control) | 1.47 | MC |
| SRR6168974 | leaf | none (control) | 1.80 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.48 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR6168979 | leaf | none (control) | 0.37 | MC |
| SRR6168980 | leaf | none (control) | 1.44 | MC |
| SRR6168981 | leaf | none (control) | 0.55 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.12 | MC |
| SRR8582888 | panicle | AM | 1.96 | MC |
| SRR8582892 | panicle | PM | 0.83 | MC |
| SRR8582893 | panicle | PM | 0.50 | MC |
| SRR5110431 | panicle | Dawn | 4.32 | MC |
| SRR4947496 | root | control | 2.40 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.17 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.22 | MC |
| SRR1633182 | panicle | WT | 1.73 | MC |
| SRR1633185 | panicle | WT | 2.43 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.60 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.20 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.58 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.42 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.61 | MC |
| SRR5126147 | root | "mock,1_day" | 2.25 | MC |
| SRR5126148 | root | "mock,1_day" | 2.27 | MC |
| SRR5126149 | root | "mock,1_day" | 1.84 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.60 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.40 | MC |
| SRR5126155 | root | "mock,7_days" | 2.16 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.52 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.31 | MC |
| SRR5126165 | root | "mock,14_days" | 3.05 | MC |
| SRR5126167 | root | "mock,14_days" | 2.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.55 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.78 | MC |
| SRR4947489 | root | control | 4.04 | MC |
| SRR4947499 | root | Al | 3.31 | MC |
| SRR4947501 | root | Al | 5.62 | MC |
| SRR4947503 | root | control | 3.88 | MC |
| SRR4947505 | root | control | 3.78 | MC |
| SRR4947507 | root | Al | 4.45 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.51 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.25 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.12 | MC |
| SRR6502094 | root | control | 0.40 | MC |
| SRR6502095 | root | control | 2.86 | MC |
| SRR6502096 | root | control | 1.24 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.76 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.74 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.97 | MC |
| SRR6502107 | root | control | 3.09 | MC |
| SRR6502108 | root | control | 0.97 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.70 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.08 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.01 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.45 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.48 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.46 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.85 | MC |
| SRR6441555 | seedling | wild_type | 3.00 | MC |
| SRR2154082 | seedling | wt | 1.95 | MC |
| SRR2154084 | seedling | wt | 2.96 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.49 | MC |
| SRR358792 | seedling | wt | 3.39 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.60 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.35 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.37 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.31 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.26 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.07 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.44 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.62 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.98 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.62 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.84 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.35 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.59 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.88 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.26 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.93 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.29 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.88 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.09 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.95 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.33 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.78 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.42 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.96 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.52 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.13 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.02 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.42 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.75 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.92 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.46 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.66 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.70 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.99 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.78 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.15 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.22 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.69 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.17 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.45 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.94 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.69 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.14 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.23 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.56 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.89 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.46 | MC |