| SRR4457249 | 2nd_leaf | DAH4 | 3.29 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.39 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.21 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.10 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.88 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.75 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.56 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.95 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.28 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.81 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.25 | MC |
| SRR3745126 | anther | wt | 1.96 | MC |
| SRR6320473 | carpel | wt | 4.02 | MC |
| SRR5560727 | caryopsis | wild_type | 2.46 | MC |
| SRR5560728 | caryopsis | wild_type | 2.20 | MC |
| SRR5560729 | caryopsis | wild_type | 1.65 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR7265401 | coleoptile | 2dA | 0.35 | MC |
| SRR7265404 | coleoptile | 2dN | 1.21 | MC |
| SRR7265405 | coleoptile | 2dN | 0.73 | MC |
| SRR7265406 | coleoptile | 3dA | 0.66 | MC |
| SRR7265407 | coleoptile | 3dA | 0.48 | MC |
| SRR7265410 | coleoptile | 3dN | 0.73 | MC |
| SRR7265411 | coleoptile | 3dN | 0.38 | MC |
| SRR7265412 | coleoptile | 4dA | 1.24 | MC |
| SRR7265413 | coleoptile | 4dA | 1.17 | MC |
| SRR7265414 | coleoptile | 4dA | 1.07 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.18 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.23 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.08 | MC |
| SRR7265382 | embryo | 3hA | 2.39 | MC |
| SRR7265383 | embryo | 3hA | 2.21 | MC |
| SRR7265384 | embryo | 3hA | 3.46 | MC |
| SRR7265385 | embryo | 3hN | 0.85 | MC |
| SRR7265386 | embryo | 3hN | 0.78 | MC |
| SRR7265387 | embryo | 3hN | 1.57 | MC |
| SRR7265388 | embryo | 12hA | 1.02 | MC |
| SRR7265389 | embryo | 12hA | 1.58 | MC |
| SRR7265394 | embryo | 24hA | 0.96 | MC |
| SRR7265396 | embryo | 24hA | 1.16 | MC |
| SRR7265397 | embryo | 24hN | 1.02 | MC |
| SRR7265398 | embryo | 24hN | 2.04 | MC |
| SRR7265399 | embryo | 24hN | 1.57 | MC |
| SRR976168 | flag_leaf | wild_type | 1.35 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.33 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.77 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.22 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.45 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.29 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.52 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.80 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.79 | MC |
| SRR8240819 | leaf | wild_type | 0.59 | MC |
| SRR8240820 | leaf | wild_type | 0.24 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.72 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.05 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.27 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.82 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.29 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.43 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.26 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.62 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.85 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.17 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.01 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.50 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.40 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.29 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.09 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.95 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.89 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.98 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.93 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.37 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.87 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.67 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.71 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.43 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.19 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.52 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.41 | MC |
| SRR504365 | leaf | wt | 0.72 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.44 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.21 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.78 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.15 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.40 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.53 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.41 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.63 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.25 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.46 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.98 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.78 | MC |
| SRR1213693 | leaf | wt | 1.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.91 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.51 | MC |
| SRR6502088 | leaf | control | 0.93 | MC |
| SRR6502089 | leaf | control | 1.01 | MC |
| SRR6502090 | leaf | control | 0.95 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.28 | MC |
| SRR6502100 | leaf | control | 0.49 | MC |
| SRR6502102 | leaf | control | 0.97 | MC |
| SRR5856927 | leaf | control | 0.47 | MC |
| SRR5856929 | leaf | control | 0.24 | MC |
| SRR5856930 | leaf | salt | 0.55 | MC |
| SRR5856931 | leaf | salt | 0.38 | MC |
| SRR5856932 | leaf | salt | 0.35 | MC |
| SRR5856933 | leaf | control | 0.29 | MC |
| SRR5856934 | leaf | control | 0.43 | MC |
| SRR5856935 | leaf | control | 0.79 | MC |
| SRR5856936 | leaf | salt | 0.54 | MC |
| SRR5856937 | leaf | salt | 0.43 | MC |
| SRR5856938 | leaf | salt | 0.41 | MC |
| SRR6168974 | leaf | none (control) | 0.30 | MC |
| SRR6168979 | leaf | none (control) | 1.54 | MC |
| SRR6168980 | leaf | none (control) | 0.69 | MC |
| SRR6168981 | leaf | none (control) | 0.96 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.43 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.88 | MC |
| SRR5110430 | panicle | Dawn | 3.20 | MC |
| SRR5110432 | panicle | Dawn | 2.41 | MC |
| SRR4947496 | root | control | 0.65 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.74 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.18 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.44 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.20 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.83 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.35 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.33 | MC |
| SRR5110445 | panicle | Dusk | 1.84 | MC |
| SRR5110446 | panicle | Dusk | 0.82 | MC |
| SRR5110447 | panicle | Dusk | 0.46 | MC |
| SRR5110448 | panicle | Dusk | 0.48 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.54 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.61 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.81 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.38 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.31 | MC |
| SRR5126147 | root | "mock,1_day" | 0.40 | MC |
| SRR5126148 | root | "mock,1_day" | 0.71 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.77 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.00 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.13 | MC |
| SRR5126153 | root | "mock,7_days" | 0.28 | MC |
| SRR5126155 | root | "mock,7_days" | 0.59 | MC |
| SRR5126157 | root | "mock,7_days" | 2.14 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.27 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.19 | MC |
| SRR5126165 | root | "mock,14_days" | 0.59 | MC |
| SRR5126167 | root | "mock,14_days" | 0.27 | MC |
| SRR5126169 | root | "mock,14_days" | 2.02 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.87 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.43 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.14 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.68 | MC |
| SRR1213695 | root | wt | 0.36 | MC |
| SRR4947478 | root | control | 0.72 | MC |
| SRR4947480 | root | control | 1.35 | MC |
| SRR4947481 | root | control | 0.68 | MC |
| SRR4947484 | root | Al | 1.04 | MC |
| SRR4947485 | root | Al | 1.18 | MC |
| SRR4947488 | root | control | 0.58 | MC |
| SRR4947489 | root | control | 1.00 | MC |
| SRR4947492 | root | Al | 1.17 | MC |
| SRR4947493 | root | Al | 1.11 | MC |
| SRR4947498 | root | Al | 1.63 | MC |
| SRR4947500 | root | Al | 1.38 | MC |
| SRR4947501 | root | Al | 2.08 | MC |
| SRR4947504 | root | control | 1.46 | MC |
| SRR4947505 | root | control | 1.44 | MC |
| SRR4947507 | root | Al | 0.65 | MC |
| SRR4947508 | root | Al | 0.73 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.03 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.37 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.09 | MC |
| SRR6502094 | root | control | 0.58 | MC |
| SRR6502095 | root | control | 1.78 | MC |
| SRR6502096 | root | control | 1.54 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.69 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.51 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.63 | MC |
| SRR6502106 | root | control | 1.11 | MC |
| SRR6502107 | root | control | 0.68 | MC |
| SRR6502108 | root | control | 0.53 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.01 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.15 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.70 | MC |
| SRR2154087 | seedling | wt | 1.36 | MC |
| SRR3098741 | seedling | wt | 1.16 | MC |
| SRR3098743 | seedling | wt | 0.54 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.71 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.27 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.60 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.51 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.92 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.99 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.37 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.65 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.32 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.41 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.25 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.12 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.69 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.96 | MC |