| SRR4457249 | 2nd_leaf | DAH4 | 2.74 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.48 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.94 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.21 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.09 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.18 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.10 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.82 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.61 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.76 | MC |
| SRR6320473 | carpel | wt | 6.07 | MC |
| SRR6320498 | carpel | wt | 3.74 | MC |
| SRR5560727 | caryopsis | wild_type | 1.61 | MC |
| SRR5560728 | caryopsis | wild_type | 2.05 | MC |
| SRR5560729 | caryopsis | wild_type | 2.29 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.55 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.99 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.78 | MC |
| SRR4947495 | root | control | 1.91 | MC |
| SRR7265413 | coleoptile | 4dA | 4.98 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.63 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.87 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.79 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.86 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.34 | MC |
| SRR7265376 | embryo | 1hA | 3.25 | MC |
| SRR7265377 | embryo | 1hA | 3.55 | MC |
| SRR7265382 | embryo | 3hA | 3.98 | MC |
| SRR7265391 | embryo | 12hN | 3.96 | MC |
| SRR7265392 | embryo | 12hN | 4.52 | MC |
| SRR7265393 | embryo | 12hN | 4.12 | MC |
| SRR7265395 | embryo | 24hA | 4.43 | MC |
| SRR7265396 | embryo | 24hA | 2.40 | MC |
| SRR7265397 | embryo | 24hN | 5.35 | MC |
| SRR7265398 | embryo | 24hN | 4.64 | MC |
| SRR7265399 | embryo | 24hN | 4.36 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.66 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.72 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.33 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.60 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.34 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.31 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.59 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.87 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.25 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.45 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.84 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.34 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.15 | MC |
| SRR1213691 | flower | wt | 1.43 | MC |
| SRR8060836 | leaf | wild_type | 1.49 | MC |
| SRR8240824 | leaf | wild_type | 0.73 | MC |
| SRR8240825 | leaf | wild_type | 0.31 | MC |
| SRR8240820 | leaf | wild_type | 0.34 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.48 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.59 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.71 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.63 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.64 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.83 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.97 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.61 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.82 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.18 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.11 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.80 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.51 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.23 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.39 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.09 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.17 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.12 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.22 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.09 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.04 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.88 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.15 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.97 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.64 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.76 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.21 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.83 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.89 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.16 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.66 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.66 | MC |
| SRR1761528 | leaf | drought | 2.66 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.86 | MC |
| SRR6417967 | leaf | H2O_control | 0.71 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.88 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.40 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.54 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.80 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.65 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.92 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.04 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.84 | MC |
| SRR1213692 | leaf | wt | 1.45 | MC |
| SRR1213693 | leaf | wt | 1.76 | MC |
| SRR6502088 | leaf | control | 0.56 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502102 | leaf | control | 0.68 | MC |
| SRR5856927 | leaf | control | 1.66 | MC |
| SRR5856929 | leaf | control | 1.41 | MC |
| SRR5856930 | leaf | salt | 1.56 | MC |
| SRR5856933 | leaf | control | 1.79 | MC |
| SRR5856934 | leaf | control | 2.21 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.43 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 7.40 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 7.32 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.29 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.99 | MC |
| SRR6168973 | leaf | none (control) | 1.91 | MC |
| SRR6168974 | leaf | none (control) | 1.49 | MC |
| SRR6168975 | leaf | none (control) | 0.84 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.43 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.95 | MC |
| SRR6168980 | leaf | none (control) | 0.41 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.54 | MC |
| SRR8582889 | panicle | AM | 0.52 | MC |
| SRR8582890 | panicle | AM | 0.25 | MC |
| SRR8582893 | panicle | PM | 1.40 | MC |
| SRR5110431 | panicle | Dawn | 1.57 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.17 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.07 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.68 | MC |
| SRR5110445 | panicle | Dusk | 4.54 | MC |
| SRR5110446 | panicle | Dusk | 1.99 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.51 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.27 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.88 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.70 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.98 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.40 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.48 | MC |
| SRR1633185 | panicle | WT | 3.25 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.27 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.55 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.51 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.61 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.74 | MC |
| SRR5126147 | root | "mock,1_day" | 1.23 | MC |
| SRR5126148 | root | "mock,1_day" | 0.56 | MC |
| SRR5126149 | root | "mock,1_day" | 2.07 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.20 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.70 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.77 | MC |
| SRR5126153 | root | "mock,7_days" | 2.96 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.49 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.90 | MC |
| SRR5126165 | root | "mock,14_days" | 3.43 | MC |
| SRR5126167 | root | "mock,14_days" | 1.65 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.03 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.66 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.92 | MC |
| SRR1213694 | root | wt | 0.68 | MC |
| SRR1213695 | root | wt | 1.74 | MC |
| SRR4947478 | root | control | 1.40 | MC |
| SRR4947479 | root | control | 1.72 | MC |
| SRR4947480 | root | control | 2.08 | MC |
| SRR4947481 | root | control | 2.77 | MC |
| SRR4947483 | root | Al | 2.20 | MC |
| SRR4947485 | root | Al | 3.16 | MC |
| SRR4947487 | root | control | 2.84 | MC |
| SRR4947488 | root | control | 2.41 | MC |
| SRR4947489 | root | control | 2.82 | MC |
| SRR4947491 | root | Al | 3.63 | MC |
| SRR4947492 | root | Al | 3.60 | MC |
| SRR4947497 | root | control | 4.53 | MC |
| SRR4947498 | root | Al | 1.43 | MC |
| SRR4947504 | root | control | 2.04 | MC |
| SRR4947506 | root | Al | 1.48 | MC |
| SRR4947509 | root | Al | 1.23 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.03 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.31 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.08 | MC |
| SRR6502095 | root | control | 1.33 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.62 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.53 | MC |
| SRR6502106 | root | control | 2.84 | MC |
| SRR6502107 | root | control | 2.73 | MC |
| SRR6502108 | root | control | 1.69 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.79 | MC |
| SRR6441555 | seedling | wild_type | 2.56 | MC |
| SRR2154086 | seedling | wt | 2.97 | MC |
| SRR2154083 | seedling | wt | 3.46 | MC |
| SRR2154084 | seedling | wt | 2.28 | MC |
| SRR2154085 | seedling | wt | 2.81 | MC |
| SRR2154087 | seedling | wt | 1.12 | MC |
| SRR3098741 | seedling | wt | 0.35 | MC |
| SRR3098742 | seedling | wt | 0.77 | MC |
| SRR3098743 | seedling | wt | 0.50 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.35 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.05 | MC |
| SRR358791 | seedling | wt | 5.11 | MC |
| SRR358792 | seedling | wt | 6.82 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.06 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.01 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.04 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.67 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.53 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.57 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.19 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.88 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.51 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.53 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.35 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.73 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.96 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.80 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.92 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.26 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.31 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.98 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.90 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.33 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.09 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.92 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.23 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.99 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.34 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.65 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.97 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.88 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.71 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.87 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |