| SRR5560728 | caryopsis | wild_type | 0.41 | MC |
| SRR5560729 | caryopsis | wild_type | 0.49 | MC |
| SRR4947495 | root | control | 4.07 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.18 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.84 | MC |
| SRR7265377 | embryo | 1hA | 0.45 | MC |
| SRR7265379 | embryo | 1hN | 0.28 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.26 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.18 | MC |
| SRR1213691 | flower | wt | 1.55 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8060836 | leaf | wild_type | 0.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.83 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.66 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.42 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.40 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.45 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.89 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.67 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.07 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.38 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.10 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.79 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.16 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.58 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.68 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.05 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.64 | MC |
| SRR504365 | leaf | wt | 0.50 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.43 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.51 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.87 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.57 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.66 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.32 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.77 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.91 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.72 | MC |
| SRR5856931 | leaf | salt | 0.17 | MC |
| SRR5856933 | leaf | control | 0.65 | MC |
| SRR5856935 | leaf | control | 0.32 | MC |
| SRR6168973 | leaf | none (control) | 0.30 | MC |
| SRR6168974 | leaf | none (control) | 0.70 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.10 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.89 | MC |
| SRR8582891 | panicle | PM | 0.58 | MC |
| SRR8582892 | panicle | PM | 2.53 | MC |
| SRR8582893 | panicle | PM | 0.71 | MC |
| SRR5110431 | panicle | Dawn | 0.35 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.88 | MC |
| SRR5110446 | panicle | Dusk | 0.34 | MC |
| SRR5110447 | panicle | Dusk | 0.42 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.70 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.25 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5126149 | root | "mock,1_day" | 0.54 | MC |
| SRR5126153 | root | "mock,7_days" | 2.30 | MC |
| SRR5126155 | root | "mock,7_days" | 1.10 | MC |
| SRR5126157 | root | "mock,7_days" | 0.56 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.86 | MC |
| SRR5126165 | root | "mock,14_days" | 1.69 | MC |
| SRR5126167 | root | "mock,14_days" | 0.43 | MC |
| SRR5126169 | root | "mock,14_days" | 1.15 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.52 | MC |
| SRR1213694 | root | wt | 0.29 | MC |
| SRR1213695 | root | wt | 0.17 | MC |
| SRR4947478 | root | control | 2.18 | MC |
| SRR4947479 | root | control | 1.31 | MC |
| SRR4947481 | root | control | 1.11 | MC |
| SRR4947482 | root | Al | 2.61 | MC |
| SRR4947483 | root | Al | 2.13 | MC |
| SRR4947488 | root | control | 0.62 | MC |
| SRR4947490 | root | Al | 1.13 | MC |
| SRR4947491 | root | Al | 4.84 | MC |
| SRR4947497 | root | control | 2.24 | MC |
| SRR4947498 | root | Al | 4.37 | MC |
| SRR4947499 | root | Al | 2.82 | MC |
| SRR4947500 | root | Al | 1.62 | MC |
| SRR4947501 | root | Al | 2.62 | MC |
| SRR4947503 | root | control | 2.25 | MC |
| SRR4947506 | root | Al | 2.39 | MC |
| SRR4947509 | root | Al | 1.81 | MC |
| SRR6502096 | root | control | 0.35 | MC |
| SRR6441554 | seedling | wild_type | 1.21 | MC |
| SRR6441555 | seedling | wild_type | 0.59 | MC |
| SRR2154086 | seedling | wt | 0.76 | MC |
| SRR2154082 | seedling | wt | 1.17 | MC |
| SRR2154084 | seedling | wt | 1.95 | MC |
| SRR2154085 | seedling | wt | 0.89 | MC |
| SRR2154087 | seedling | wt | 1.53 | MC |
| SRR3098741 | seedling | wt | 0.52 | MC |
| SRR3098742 | seedling | wt | 0.75 | MC |
| SRR3098743 | seedling | wt | 0.42 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.69 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.46 | MC |
| SRR1944583 | seedling | no_treatment | 1.50 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.75 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.23 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.64 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.20 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.12 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.57 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.15 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.85 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.18 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.03 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.13 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.16 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.39 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.72 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.64 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.72 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.23 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.87 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.56 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.55 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |