| SRR4457251 | 2nd_leaf | DAH4 | 0.40 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.36 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.55 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.40 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.53 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.64 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.98 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.54 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.52 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.62 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.94 | MC |
| SRR358797 | callus | wt | 0.91 | MC |
| SRR358798 | callus | wt | 0.89 | MC |
| SRR5560727 | caryopsis | wild_type | 0.32 | MC |
| SRR5560728 | caryopsis | wild_type | 0.50 | MC |
| SRR5560729 | caryopsis | wild_type | 0.34 | MC |
| SRR7265400 | coleoptile | 2dA | 0.54 | MC |
| SRR7265401 | coleoptile | 2dA | 0.30 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR7265382 | embryo | 3hA | 0.75 | MC |
| SRR7265383 | embryo | 3hA | 0.64 | MC |
| SRR7265384 | embryo | 3hA | 0.32 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.79 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.96 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.53 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.22 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.27 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.58 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.40 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.37 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.88 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.01 | MC |
| SRR8240819 | leaf | wild_type | 0.28 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.69 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.41 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.39 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.37 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.47 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.43 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.42 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.31 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.47 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.47 | MC |
| SRR1761529 | leaf | drought | 0.47 | MC |
| SRR504365 | leaf | wt | 0.43 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.32 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.36 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.45 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.37 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.47 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.24 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.49 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.89 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.61 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.79 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.84 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.55 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.49 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.60 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.73 | MC |
| SRR1213692 | leaf | wt | 0.57 | MC |
| SRR1213693 | leaf | wt | 1.18 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.37 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502088 | leaf | control | 0.32 | MC |
| SRR6502089 | leaf | control | 0.37 | MC |
| SRR6502090 | leaf | control | 0.55 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502100 | leaf | control | 0.32 | MC |
| SRR6502102 | leaf | control | 0.37 | MC |
| SRR6168973 | leaf | none (control) | 0.47 | MC |
| SRR6168974 | leaf | none (control) | 0.74 | MC |
| SRR6168975 | leaf | none (control) | 0.54 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.29 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.33 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.54 | MC |
| SRR8582893 | panicle | PM | 0.35 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.35 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.50 | MC |
| SRR5126147 | root | "mock,1_day" | 0.30 | MC |
| SRR5126149 | root | "mock,1_day" | 0.48 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.72 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126155 | root | "mock,7_days" | 0.53 | MC |
| SRR5126157 | root | "mock,7_days" | 0.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.17 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.92 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.17 | MC |
| SRR5126165 | root | "mock,14_days" | 0.88 | MC |
| SRR5126167 | root | "mock,14_days" | 0.55 | MC |
| SRR5126169 | root | "mock,14_days" | 0.34 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.54 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.94 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.25 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.37 | MC |
| SRR1213694 | root | wt | 0.67 | MC |
| SRR1213695 | root | wt | 0.87 | MC |
| SRR4947508 | root | Al | 0.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502094 | root | control | 0.73 | MC |
| SRR6502095 | root | control | 0.74 | MC |
| SRR6502096 | root | control | 0.54 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.47 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.11 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502106 | root | control | 0.86 | MC |
| SRR6502107 | root | control | 0.69 | MC |
| SRR6502108 | root | control | 0.82 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.38 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.46 | MC |
| SRR6441554 | seedling | wild_type | 0.46 | MC |
| SRR6441555 | seedling | wild_type | 0.39 | MC |
| SRR2154086 | seedling | wt | 1.07 | MC |
| SRR2154083 | seedling | wt | 0.71 | MC |
| SRR2154085 | seedling | wt | 0.39 | MC |
| SRR2154087 | seedling | wt | 0.87 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR3098742 | seedling | wt | 0.16 | MC |
| SRR3098743 | seedling | wt | 0.22 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.82 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.58 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.01 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.49 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.81 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.08 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.19 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.61 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.35 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.50 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.88 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.43 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.37 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.29 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.72 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.55 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.44 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.28 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.37 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.48 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.30 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.50 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.07 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.41 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.99 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.47 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.49 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.07 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.59 | MC |