| SRR4457254 | 2nd_leaf | DAH12 | 3.03 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.27 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.94 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.06 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.53 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.81 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.62 | MC |
| SRR3745126 | anther | wt | 0.59 | MC |
| SRR5560727 | caryopsis | wild_type | 4.23 | MC |
| SRR5560728 | caryopsis | wild_type | 1.72 | MC |
| SRR5560729 | caryopsis | wild_type | 4.36 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.77 | MC |
| SRR7265400 | coleoptile | 2dA | 1.54 | MC |
| SRR7265401 | coleoptile | 2dA | 1.44 | MC |
| SRR7265402 | coleoptile | 2dA | 1.52 | MC |
| SRR7265406 | coleoptile | 3dA | 2.57 | MC |
| SRR7265408 | coleoptile | 3dA | 2.19 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.10 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.17 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.08 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.96 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.01 | MC |
| SRR7265394 | embryo | 24hA | 0.53 | MC |
| SRR2338866 | endosprem | control | 1.06 | MC |
| SRR2338867 | endosprem | control | 0.69 | MC |
| SRR2338869 | endosprem | high_temperature | 0.60 | MC |
| SRR976168 | flag_leaf | wild_type | 2.23 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.28 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.84 | MC |
| SRR1213691 | flower | wt | 0.77 | MC |
| SRR8060836 | leaf | wild_type | 0.23 | MC |
| SRR8240824 | leaf | wild_type | 1.21 | MC |
| SRR8240825 | leaf | wild_type | 0.98 | MC |
| SRR8240826 | leaf | wild_type | 1.60 | MC |
| SRR8240818 | leaf | wild_type | 1.37 | MC |
| SRR8240819 | leaf | wild_type | 1.46 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.35 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.01 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.33 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.85 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.27 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.61 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.44 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.88 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.71 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.34 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.41 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.32 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.51 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.31 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.19 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.89 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.20 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.50 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.38 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.23 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.33 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.47 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.77 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.40 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.77 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.40 | MC |
| SRR1761528 | leaf | drought | 1.77 | MC |
| SRR1761531 | leaf | control | 3.40 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.76 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.00 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.41 | MC |
| SRR6417968 | leaf | H2O_control | 0.94 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.42 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.58 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.84 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.03 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 4.03 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.39 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.94 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.52 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.67 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.65 | MC |
| SRR6502090 | leaf | control | 3.23 | MC |
| SRR5856931 | leaf | salt | 0.28 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.56 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.59 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.99 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.07 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.39 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 6.29 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.94 | MC |
| SRR6168974 | leaf | none (control) | 0.60 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.21 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR8582888 | panicle | AM | 3.16 | MC |
| SRR8582891 | panicle | PM | 1.95 | MC |
| SRR8582892 | panicle | PM | 2.52 | MC |
| SRR8582893 | panicle | PM | 3.85 | MC |
| SRR5110429 | panicle | Dawn | 1.75 | MC |
| SRR5110431 | panicle | Dawn | 2.47 | MC |
| SRR4947496 | root | control | 1.58 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.82 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.43 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.02 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.27 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.91 | MC |
| SRR5110447 | panicle | Dusk | 1.00 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.98 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.06 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.47 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.39 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.86 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.97 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.08 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.34 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.94 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.46 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.50 | MC |
| SRR1633182 | panicle | WT | 0.40 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.69 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.39 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.50 | MC |
| SRR5126147 | root | "mock,1_day" | 1.16 | MC |
| SRR5126148 | root | "mock,1_day" | 0.83 | MC |
| SRR5126149 | root | "mock,1_day" | 3.63 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.52 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126153 | root | "mock,7_days" | 1.46 | MC |
| SRR5126155 | root | "mock,7_days" | 2.75 | MC |
| SRR5126157 | root | "mock,7_days" | 3.42 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.93 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.97 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.58 | MC |
| SRR5126165 | root | "mock,14_days" | 2.00 | MC |
| SRR5126167 | root | "mock,14_days" | 2.74 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.15 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.32 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR4947481 | root | control | 1.17 | MC |
| SRR4947484 | root | Al | 1.61 | MC |
| SRR4947485 | root | Al | 1.37 | MC |
| SRR4947488 | root | control | 1.17 | MC |
| SRR4947489 | root | control | 1.50 | MC |
| SRR4947492 | root | Al | 1.11 | MC |
| SRR4947493 | root | Al | 1.19 | MC |
| SRR4947497 | root | control | 0.85 | MC |
| SRR4947500 | root | Al | 1.19 | MC |
| SRR4947501 | root | Al | 1.02 | MC |
| SRR4947504 | root | control | 1.79 | MC |
| SRR4947505 | root | control | 1.52 | MC |
| SRR4947508 | root | Al | 1.85 | MC |
| SRR4947509 | root | Al | 2.02 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.26 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.35 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.43 | MC |
| SRR6502094 | root | control | 3.59 | MC |
| SRR6502095 | root | control | 3.41 | MC |
| SRR6502096 | root | control | 3.50 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.01 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.42 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.68 | MC |
| SRR6502106 | root | control | 1.73 | MC |
| SRR6502108 | root | control | 1.67 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.71 | MC |
| SRR2154086 | seedling | wt | 1.66 | MC |
| SRR2154084 | seedling | wt | 3.32 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.60 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.08 | MC |
| SRR358792 | seedling | wt | 7.13 | MC |
| SRR358793 | seedling | wt | 6.59 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.22 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.54 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.31 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.34 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.78 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.48 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.97 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.69 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.39 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.32 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.61 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.14 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.37 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.58 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.30 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.75 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.22 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.49 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.68 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.64 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.86 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.37 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.63 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.96 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.39 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.85 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.34 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.02 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.03 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.55 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.82 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.47 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.88 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |