| SRR4457251 | 2nd_leaf | DAH4 | 2.32 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.17 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.81 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.17 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.14 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.72 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.20 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.20 | MC |
| SRR3745126 | anther | wt | 3.22 | MC |
| SRR3745127 | anther | wt | 1.21 | MC |
| SRR6320473 | carpel | wt | 1.94 | MC |
| SRR5560727 | caryopsis | wild_type | 4.65 | MC |
| SRR5560728 | caryopsis | wild_type | 4.93 | MC |
| SRR5560729 | caryopsis | wild_type | 2.89 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.81 | MC |
| SRR4947495 | root | control | 3.44 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.36 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.86 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.38 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.69 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.88 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.44 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.22 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.01 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.84 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.63 | MC |
| SRR7265376 | embryo | 1hA | 2.20 | MC |
| SRR7265379 | embryo | 1hN | 2.47 | MC |
| SRR7265380 | embryo | 1hN | 1.66 | MC |
| SRR7265382 | embryo | 3hA | 4.74 | MC |
| SRR7265384 | embryo | 3hA | 2.37 | MC |
| SRR7265385 | embryo | 3hN | 3.57 | MC |
| SRR7265386 | embryo | 3hN | 1.64 | MC |
| SRR7265395 | embryo | 24hA | 3.76 | MC |
| SRR976168 | flag_leaf | wild_type | 1.47 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.92 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.62 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.61 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.32 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.04 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.53 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.54 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.15 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.39 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.51 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.44 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.00 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.97 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.45 | MC |
| SRR8060835 | leaf | wild_type | 1.58 | MC |
| SRR8060836 | leaf | wild_type | 0.62 | MC |
| SRR8060837 | leaf | wild_type | 0.86 | MC |
| SRR8240824 | leaf | wild_type | 0.43 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.21 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.64 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.57 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.75 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.13 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.67 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.04 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.76 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.51 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.78 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.38 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.35 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.82 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.63 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.12 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.43 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.35 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.20 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.61 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.04 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.18 | MC |
| SRR6417967 | leaf | H2O_control | 1.38 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.14 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.32 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.57 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.21 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.24 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.49 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.68 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.48 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.47 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.21 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.72 | MC |
| SRR1213692 | leaf | wt | 1.81 | MC |
| SRR1213693 | leaf | wt | 2.55 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.96 | MC |
| SRR6502090 | leaf | control | 0.84 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.26 | MC |
| SRR6502100 | leaf | control | 3.09 | MC |
| SRR6502101 | leaf | control | 1.65 | MC |
| SRR6502102 | leaf | control | 1.52 | MC |
| SRR5856927 | leaf | control | 1.11 | MC |
| SRR5856928 | leaf | control | 2.15 | MC |
| SRR5856929 | leaf | control | 2.15 | MC |
| SRR5856933 | leaf | control | 2.33 | MC |
| SRR5856934 | leaf | control | 1.90 | MC |
| SRR5856936 | leaf | salt | 1.09 | MC |
| SRR5856937 | leaf | salt | 0.16 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.36 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.39 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.93 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.84 | MC |
| SRR6168973 | leaf | none (control) | 0.44 | MC |
| SRR6168974 | leaf | none (control) | 3.68 | MC |
| SRR6168975 | leaf | none (control) | 1.26 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.46 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.57 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.02 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR8582888 | panicle | AM | 0.30 | MC |
| SRR8582892 | panicle | PM | 4.76 | MC |
| SRR8582893 | panicle | PM | 0.71 | MC |
| SRR4947496 | root | control | 3.35 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.34 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.81 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.64 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.60 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.82 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.91 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.31 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.48 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.34 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.29 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.54 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.56 | MC |
| SRR5126148 | root | "mock,1_day" | 3.01 | MC |
| SRR5126149 | root | "mock,1_day" | 3.82 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.75 | MC |
| SRR5126155 | root | "mock,7_days" | 2.69 | MC |
| SRR5126157 | root | "mock,7_days" | 5.43 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.00 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.01 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.36 | MC |
| SRR5126165 | root | "mock,14_days" | 3.22 | MC |
| SRR5126167 | root | "mock,14_days" | 1.81 | MC |
| SRR5126169 | root | "mock,14_days" | 1.95 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.13 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.63 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.10 | MC |
| SRR1213694 | root | wt | 2.92 | MC |
| SRR1213695 | root | wt | 2.15 | MC |
| SRR4947481 | root | control | 3.30 | MC |
| SRR4947484 | root | Al | 3.68 | MC |
| SRR4947485 | root | Al | 3.41 | MC |
| SRR4947487 | root | control | 3.12 | MC |
| SRR4947488 | root | control | 0.61 | MC |
| SRR4947489 | root | control | 3.48 | MC |
| SRR4947494 | root | control | 3.70 | MC |
| SRR4947498 | root | Al | 5.60 | MC |
| SRR4947502 | root | control | 4.29 | MC |
| SRR4947503 | root | control | 4.80 | MC |
| SRR4947504 | root | control | 4.53 | MC |
| SRR4947505 | root | control | 3.40 | MC |
| SRR4947506 | root | Al | 2.12 | MC |
| SRR4947509 | root | Al | 5.21 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502094 | root | control | 1.69 | MC |
| SRR6502096 | root | control | 2.86 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.31 | MC |
| SRR6502107 | root | control | 3.76 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.68 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.93 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.38 | MC |
| SRR6441554 | seedling | wild_type | 1.89 | MC |
| SRR6441555 | seedling | wild_type | 2.72 | MC |
| SRR2154087 | seedling | wt | 2.43 | MC |
| SRR3098741 | seedling | wt | 0.85 | MC |
| SRR3098742 | seedling | wt | 0.49 | MC |
| SRR3098743 | seedling | wt | 0.33 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.18 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.01 | MC |
| SRR358792 | seedling | wt | 5.66 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.13 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.60 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.88 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.42 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.51 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.02 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.18 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.86 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.86 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.21 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.81 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.94 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.19 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.71 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.79 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.44 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 8.10 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.78 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.07 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.08 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.18 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.97 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.59 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.95 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.85 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.07 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.93 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.18 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.35 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.01 | MC |