| SRR4457249 | 2nd_leaf | DAH4 | 5.27 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.48 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.05 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.10 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 5.30 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.33 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.34 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.11 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.42 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.45 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.00 | MC |
| SRR7265401 | coleoptile | 2dA | 1.76 | MC |
| SRR7265402 | coleoptile | 2dA | 2.63 | MC |
| SRR7265403 | coleoptile | 2dN | 1.69 | MC |
| SRR7265404 | coleoptile | 2dN | 2.48 | MC |
| SRR7265405 | coleoptile | 2dN | 2.39 | MC |
| SRR7265406 | coleoptile | 3dA | 1.07 | MC |
| SRR7265407 | coleoptile | 3dA | 1.63 | MC |
| SRR7265408 | coleoptile | 3dA | 0.81 | MC |
| SRR7265409 | coleoptile | 3dN | 1.94 | MC |
| SRR7265410 | coleoptile | 3dN | 1.83 | MC |
| SRR7265411 | coleoptile | 3dN | 1.58 | MC |
| SRR7265412 | coleoptile | 4dA | 2.84 | MC |
| SRR7265414 | coleoptile | 4dA | 1.23 | MC |
| SRR7265415 | coleoptile | 4dN | 4.07 | MC |
| SRR7265416 | coleoptile | 4dN | 3.05 | MC |
| SRR7265417 | coleoptile | 4dN | 1.03 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.02 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.71 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.32 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.55 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.58 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.38 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.19 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.16 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.61 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.53 | MC |
| SRR7265376 | embryo | 1hA | 1.04 | MC |
| SRR7265377 | embryo | 1hA | 1.84 | MC |
| SRR7265378 | embryo | 1hA | 0.77 | MC |
| SRR7265380 | embryo | 1hN | 2.51 | MC |
| SRR7265382 | embryo | 3hA | 2.22 | MC |
| SRR7265383 | embryo | 3hA | 1.64 | MC |
| SRR7265384 | embryo | 3hA | 0.79 | MC |
| SRR7265385 | embryo | 3hN | 3.92 | MC |
| SRR7265387 | embryo | 3hN | 1.34 | MC |
| SRR7265388 | embryo | 12hA | 3.43 | MC |
| SRR7265390 | embryo | 12hA | 1.88 | MC |
| SRR7265391 | embryo | 12hN | 3.48 | MC |
| SRR7265392 | embryo | 12hN | 2.69 | MC |
| SRR7265393 | embryo | 12hN | 0.96 | MC |
| SRR7265394 | embryo | 24hA | 3.33 | MC |
| SRR7265396 | embryo | 24hA | 2.11 | MC |
| SRR7265397 | embryo | 24hN | 1.41 | MC |
| SRR7265398 | embryo | 24hN | 3.92 | MC |
| SRR7265399 | embryo | 24hN | 1.27 | MC |
| SRR2338866 | endosprem | control | 2.62 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.02 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.95 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.59 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.34 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.73 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.68 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.82 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.79 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.47 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.23 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.41 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.61 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.31 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.84 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.83 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.39 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.06 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.23 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.75 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.16 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.92 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.39 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.17 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.01 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.90 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.30 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.37 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.74 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.68 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.41 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.37 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.95 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.06 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.63 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.80 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.13 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.15 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.13 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.15 | MC |
| SRR1761530 | leaf | control | 1.13 | MC |
| SRR1761531 | leaf | control | 2.15 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.36 | MC |
| SRR6417967 | leaf | H2O_control | 3.47 | MC |
| SRR6417968 | leaf | H2O_control | 2.35 | MC |
| SRR6417969 | leaf | H2O_control | 1.19 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.00 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.01 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.05 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.86 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.93 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.21 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.68 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.65 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.63 | MC |
| SRR1213692 | leaf | wt | 0.56 | MC |
| SRR1213693 | leaf | wt | 2.57 | MC |
| SRR6502088 | leaf | control | 0.72 | MC |
| SRR6502089 | leaf | control | 1.59 | MC |
| SRR6168975 | leaf | none (control) | 5.08 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168980 | leaf | none (control) | 1.67 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.33 | MC |
| SRR8582889 | panicle | AM | 1.11 | MC |
| SRR8582891 | panicle | PM | 5.75 | MC |
| SRR8582893 | panicle | PM | 2.06 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.92 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.18 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.29 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.21 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.14 | MC |
| SRR5126147 | root | "mock,1_day" | 2.86 | MC |
| SRR5126148 | root | "mock,1_day" | 2.40 | MC |
| SRR5126149 | root | "mock,1_day" | 1.14 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.79 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.54 | MC |
| SRR5126153 | root | "mock,7_days" | 1.54 | MC |
| SRR5126155 | root | "mock,7_days" | 1.83 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.66 | MC |
| SRR5126169 | root | "mock,14_days" | 3.18 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.65 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.86 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.35 | MC |
| SRR1213694 | root | wt | 0.99 | MC |
| SRR4947481 | root | control | 3.71 | MC |
| SRR4947488 | root | control | 1.81 | MC |
| SRR4947497 | root | control | 2.08 | MC |
| SRR4947500 | root | Al | 2.10 | MC |
| SRR4947508 | root | Al | 1.92 | MC |
| SRR4947509 | root | Al | 1.89 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502095 | root | control | 2.93 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.27 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.57 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.98 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.06 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.18 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.38 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.52 | MC |
| SRR6441554 | seedling | wild_type | 1.04 | MC |
| SRR6441555 | seedling | wild_type | 1.77 | MC |
| SRR2154085 | seedling | wt | 1.91 | MC |
| SRR2154087 | seedling | wt | 3.83 | MC |
| SRR3098741 | seedling | wt | 1.92 | MC |
| SRR3098743 | seedling | wt | 2.44 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.34 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.17 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.79 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.98 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.41 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.87 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.43 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.69 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.03 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.64 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.14 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.69 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.49 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.12 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.30 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.67 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.70 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.23 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.03 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.89 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.57 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.41 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.77 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.96 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.79 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.45 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.28 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.56 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.80 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.74 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.32 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.30 | MC |