| SRR5560727 | caryopsis | wild_type | 0.66 | MC |
| SRR5560728 | caryopsis | wild_type | 0.31 | MC |
| SRR5560729 | caryopsis | wild_type | 0.76 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.31 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.61 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.25 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.33 | MC |
| SRR7265400 | coleoptile | 2dA | 0.39 | MC |
| SRR7265402 | coleoptile | 2dA | 0.35 | MC |
| SRR7265403 | coleoptile | 2dN | 0.41 | MC |
| SRR7265409 | coleoptile | 3dN | 0.53 | MC |
| SRR7265410 | coleoptile | 3dN | 0.47 | MC |
| SRR7265411 | coleoptile | 3dN | 0.84 | MC |
| SRR7265413 | coleoptile | 4dA | 0.51 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.49 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.12 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.86 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.98 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.98 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.54 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.08 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.79 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.97 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR1213693 | leaf | wt | 1.68 | MC |
| SRR5110432 | panicle | Dawn | 0.51 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.55 | MC |
| SRR5110446 | panicle | Dusk | 0.34 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.29 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.52 | MC |
| SRR1633182 | panicle | WT | 0.65 | MC |
| SRR1633185 | panicle | WT | 0.45 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.98 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.60 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.68 | MC |
| SRR1213695 | root | wt | 1.86 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.27 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.44 | MC |
| SRR2154086 | seedling | wt | 0.38 | MC |
| SRR2154083 | seedling | wt | 1.36 | MC |
| SRR2154084 | seedling | wt | 0.87 | MC |
| SRR2154085 | seedling | wt | 0.39 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.45 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.36 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.66 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.98 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.16 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.27 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.92 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.06 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.16 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.61 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.16 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.67 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.55 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.50 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.73 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.28 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.04 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.13 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.30 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.66 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.38 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.17 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.42 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.97 | MC |