| SRR4457260 | 2nd_leaf | DAH28 | 0.37 | MC |
| SRR5560727 | caryopsis | wild_type | 1.09 | MC |
| SRR5560728 | caryopsis | wild_type | 1.03 | MC |
| SRR5560729 | caryopsis | wild_type | 1.05 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.13 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.22 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.04 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.38 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.18 | MC |
| SRR7265377 | embryo | 1hA | 0.40 | MC |
| SRR7265378 | embryo | 1hA | 0.31 | MC |
| SRR7265387 | embryo | 3hN | 0.37 | MC |
| SRR7265390 | embryo | 12hA | 0.40 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.61 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.44 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.57 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.27 | MC |
| SRR1213691 | flower | wt | 2.57 | MC |
| SRR8240826 | leaf | wild_type | 0.34 | MC |
| SRR8240819 | leaf | wild_type | 0.27 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.66 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.63 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.70 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.58 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.03 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.74 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.88 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.98 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.60 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.84 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.66 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.26 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.68 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.57 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.61 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.29 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.61 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.29 | MC |
| SRR1761529 | leaf | drought | 1.61 | MC |
| SRR1761531 | leaf | control | 1.29 | MC |
| SRR504365 | leaf | wt | 1.27 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.82 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.84 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.88 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.03 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.49 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.05 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.96 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.81 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.58 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.76 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.45 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.21 | MC |
| SRR6502100 | leaf | control | 3.61 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.81 | MC |
| SRR6168973 | leaf | none (control) | 2.07 | MC |
| SRR6168974 | leaf | none (control) | 2.01 | MC |
| SRR6168975 | leaf | none (control) | 2.04 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.84 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.43 | MC |
| SRR6168979 | leaf | none (control) | 0.40 | MC |
| SRR6168981 | leaf | none (control) | 1.01 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.18 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.51 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.82 | MC |
| SRR8582888 | panicle | AM | 2.46 | MC |
| SRR8582891 | panicle | PM | 3.93 | MC |
| SRR8582892 | panicle | PM | 2.82 | MC |
| SRR4947496 | root | control | 1.24 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.65 | MC |
| SRR5110448 | panicle | Dusk | 0.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.03 | MC |
| SRR1633185 | panicle | WT | 0.60 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.46 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.87 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.67 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.67 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.99 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.39 | MC |
| SRR5126147 | root | "mock,1_day" | 1.10 | MC |
| SRR5126148 | root | "mock,1_day" | 1.60 | MC |
| SRR5126149 | root | "mock,1_day" | 1.09 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.97 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.96 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.68 | MC |
| SRR5126157 | root | "mock,7_days" | 5.07 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.37 | MC |
| SRR1213695 | root | wt | 1.04 | MC |
| SRR4947481 | root | control | 0.87 | MC |
| SRR4947484 | root | Al | 0.98 | MC |
| SRR4947488 | root | control | 1.33 | MC |
| SRR4947489 | root | control | 1.65 | MC |
| SRR4947504 | root | control | 1.34 | MC |
| SRR4947505 | root | control | 1.38 | MC |
| SRR4947506 | root | Al | 0.39 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.15 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.88 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502094 | root | control | 1.17 | MC |
| SRR6502095 | root | control | 0.85 | MC |
| SRR6502096 | root | control | 1.28 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.39 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.46 | MC |
| SRR6502106 | root | control | 1.02 | MC |
| SRR6502108 | root | control | 0.72 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.72 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.44 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.89 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.07 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.31 | MC |
| SRR2154086 | seedling | wt | 0.99 | MC |
| SRR2154082 | seedling | wt | 0.87 | MC |
| SRR2154083 | seedling | wt | 1.73 | MC |
| SRR2154084 | seedling | wt | 0.61 | MC |
| SRR2154085 | seedling | wt | 1.42 | MC |
| SRR2154087 | seedling | wt | 1.23 | MC |
| SRR3098741 | seedling | wt | 2.26 | MC |
| SRR3098742 | seedling | wt | 2.01 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.14 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.87 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.59 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.67 | MC |
| SRR358792 | seedling | wt | 1.55 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.62 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.20 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.44 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.93 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.77 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.52 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.57 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.98 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.79 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.52 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.00 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.25 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.22 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.88 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.48 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.77 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |