| SRR358797 | callus | wt | 1.22 | MC |
| SRR5560728 | caryopsis | wild_type | 0.27 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.51 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.23 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.39 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.28 | MC |
| SRR8060836 | leaf | wild_type | 0.25 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.49 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.33 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.64 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.58 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.35 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.42 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.63 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.53 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.62 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.47 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.70 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.42 | MC |
| SRR1761529 | leaf | drought | 0.53 | MC |
| SRR1761530 | leaf | control | 0.52 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.40 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.04 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.21 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.58 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.22 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.35 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.27 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.13 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.82 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.72 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR1213692 | leaf | wt | 0.32 | MC |
| SRR1213693 | leaf | wt | 0.34 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.33 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.44 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR6502088 | leaf | control | 0.32 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6168974 | leaf | none (control) | 0.33 | MC |
| SRR6168979 | leaf | none (control) | 0.71 | MC |
| SRR6168981 | leaf | none (control) | 0.27 | MC |
| SRR8582888 | panicle | AM | 0.68 | MC |
| SRR8582889 | panicle | AM | 0.46 | MC |
| SRR8582890 | panicle | AM | 0.50 | MC |
| SRR8582893 | panicle | PM | 0.35 | MC |
| SRR1633182 | panicle | WT | 0.38 | MC |
| SRR1633185 | panicle | WT | 0.84 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.91 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.96 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.18 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.52 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.43 | MC |
| SRR5126147 | root | "mock,1_day" | 1.03 | MC |
| SRR5126148 | root | "mock,1_day" | 0.48 | MC |
| SRR5126149 | root | "mock,1_day" | 0.52 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.65 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.79 | MC |
| SRR5126153 | root | "mock,7_days" | 0.57 | MC |
| SRR5126155 | root | "mock,7_days" | 1.03 | MC |
| SRR5126157 | root | "mock,7_days" | 0.79 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.20 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.43 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.99 | MC |
| SRR5126165 | root | "mock,14_days" | 0.38 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.84 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.70 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.33 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.37 | MC |
| SRR1213695 | root | wt | 0.46 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.80 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.35 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.48 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.55 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.30 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.03 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.76 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.04 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.24 | MC |
| SRR2154086 | seedling | wt | 1.04 | MC |
| SRR3098743 | seedling | wt | 1.16 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.30 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.74 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.71 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.70 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.15 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.20 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.49 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.00 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.99 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.31 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.40 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.46 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.42 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.74 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.78 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.85 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.32 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.46 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.52 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |