| SRR4457252 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.01 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.57 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.72 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.32 | MC |
| SRR358796 | callus | wt | 1.10 | MC |
| SRR358798 | callus | wt | 1.13 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.71 | MC |
| SRR7265400 | coleoptile | 2dA | 0.30 | MC |
| SRR7265404 | coleoptile | 2dN | 0.50 | MC |
| SRR7265405 | coleoptile | 2dN | 0.50 | MC |
| SRR7265414 | coleoptile | 4dA | 0.92 | MC |
| SRR7265415 | coleoptile | 4dN | 0.66 | MC |
| SRR7265417 | coleoptile | 4dN | 0.50 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.67 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.21 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.38 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.66 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.39 | MC |
| SRR7265377 | embryo | 1hA | 0.37 | MC |
| SRR7265379 | embryo | 1hN | 0.30 | MC |
| SRR7265381 | embryo | 1hN | 0.27 | MC |
| SRR7265385 | embryo | 3hN | 0.49 | MC |
| SRR7265388 | embryo | 12hA | 0.45 | MC |
| SRR7265389 | embryo | 12hA | 0.52 | MC |
| SRR7265390 | embryo | 12hA | 0.74 | MC |
| SRR7265398 | embryo | 24hN | 1.08 | MC |
| SRR976168 | flag_leaf | wild_type | 0.71 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.22 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.31 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.54 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.40 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.44 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.94 | MC |
| SRR1213691 | flower | wt | 0.31 | MC |
| SRR8060837 | leaf | wild_type | 0.45 | MC |
| SRR8240825 | leaf | wild_type | 0.34 | MC |
| SRR8240820 | leaf | wild_type | 0.45 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.83 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.68 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.23 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.47 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.41 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.46 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.56 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.46 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.56 | MC |
| SRR1761529 | leaf | drought | 0.46 | MC |
| SRR1761530 | leaf | control | 0.56 | MC |
| SRR504365 | leaf | wt | 0.23 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.26 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.32 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.49 | MC |
| SRR1213692 | leaf | wt | 0.56 | MC |
| SRR1213693 | leaf | wt | 0.86 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502088 | leaf | control | 0.63 | MC |
| SRR6502089 | leaf | control | 0.76 | MC |
| SRR6502090 | leaf | control | 0.49 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6502100 | leaf | control | 0.63 | MC |
| SRR6502101 | leaf | control | 1.10 | MC |
| SRR6502102 | leaf | control | 0.96 | MC |
| SRR5856927 | leaf | control | 1.32 | MC |
| SRR5856928 | leaf | control | 0.21 | MC |
| SRR5856929 | leaf | control | 0.40 | MC |
| SRR5856930 | leaf | salt | 0.42 | MC |
| SRR5856931 | leaf | salt | 0.38 | MC |
| SRR5856932 | leaf | salt | 0.56 | MC |
| SRR5856933 | leaf | control | 0.90 | MC |
| SRR5856934 | leaf | control | 1.04 | MC |
| SRR5856935 | leaf | control | 1.01 | MC |
| SRR5856936 | leaf | salt | 0.25 | MC |
| SRR5856938 | leaf | salt | 0.52 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR8582888 | panicle | AM | 0.42 | MC |
| SRR8582889 | panicle | AM | 0.36 | MC |
| SRR8582890 | panicle | AM | 0.54 | MC |
| SRR8582892 | panicle | PM | 0.69 | MC |
| SRR4947496 | root | control | 0.52 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.24 | MC |
| SRR1633182 | panicle | WT | 0.69 | MC |
| SRR1633185 | panicle | WT | 1.15 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.98 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.68 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.51 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.80 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.41 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.65 | MC |
| SRR5126147 | root | "mock,1_day" | 0.61 | MC |
| SRR5126148 | root | "mock,1_day" | 0.27 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.82 | MC |
| SRR5126153 | root | "mock,7_days" | 0.50 | MC |
| SRR5126155 | root | "mock,7_days" | 0.77 | MC |
| SRR5126157 | root | "mock,7_days" | 0.63 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.08 | MC |
| SRR5126165 | root | "mock,14_days" | 0.37 | MC |
| SRR5126167 | root | "mock,14_days" | 0.55 | MC |
| SRR5126169 | root | "mock,14_days" | 1.14 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.28 | MC |
| SRR1213694 | root | wt | 0.43 | MC |
| SRR1213695 | root | wt | 0.73 | MC |
| SRR4947480 | root | control | 0.71 | MC |
| SRR4947493 | root | Al | 0.85 | MC |
| SRR4947497 | root | control | 0.85 | MC |
| SRR4947500 | root | Al | 0.97 | MC |
| SRR4947501 | root | Al | 1.12 | MC |
| SRR4947505 | root | control | 1.09 | MC |
| SRR4947508 | root | Al | 0.67 | MC |
| SRR4947509 | root | Al | 1.01 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.87 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502094 | root | control | 0.66 | MC |
| SRR6502095 | root | control | 0.59 | MC |
| SRR6502096 | root | control | 0.70 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.56 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502106 | root | control | 0.67 | MC |
| SRR6502107 | root | control | 0.47 | MC |
| SRR6502108 | root | control | 0.49 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.26 | MC |
| SRR6441555 | seedling | wild_type | 0.55 | MC |
| SRR2154086 | seedling | wt | 0.46 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.61 | MC |
| SRR358791 | seedling | wt | 0.92 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.31 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.46 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.87 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.21 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.65 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.75 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.35 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.38 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.38 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.34 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.33 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.45 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.32 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.69 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.34 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.80 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.99 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.78 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.01 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.64 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.73 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.71 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.95 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.22 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.60 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.01 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.72 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.57 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.55 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.52 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.08 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.84 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.37 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.98 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.85 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.08 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.87 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.90 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.41 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.55 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.59 | MC |