| SRR4457259 | 2nd_leaf | DAH28 | 1.89 | MC |
| SRR358797 | callus | wt | 9.05 | MC |
| SRR358798 | callus | wt | 7.48 | MC |
| SRR6320473 | carpel | wt | 2.76 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.95 | MC |
| SRR7265400 | coleoptile | 2dA | 2.66 | MC |
| SRR7265401 | coleoptile | 2dA | 2.75 | MC |
| SRR7265403 | coleoptile | 2dN | 0.85 | MC |
| SRR7265407 | coleoptile | 3dA | 0.27 | MC |
| SRR7265408 | coleoptile | 3dA | 2.22 | MC |
| SRR7265409 | coleoptile | 3dN | 3.15 | MC |
| SRR7265411 | coleoptile | 3dN | 0.93 | MC |
| SRR7265412 | coleoptile | 4dA | 2.43 | MC |
| SRR7265413 | coleoptile | 4dA | 0.51 | MC |
| SRR7265414 | coleoptile | 4dA | 3.10 | MC |
| SRR7265415 | coleoptile | 4dN | 2.58 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.10 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265377 | embryo | 1hA | 0.45 | MC |
| SRR7265378 | embryo | 1hA | 0.26 | MC |
| SRR7265382 | embryo | 3hA | 0.67 | MC |
| SRR7265384 | embryo | 3hA | 0.59 | MC |
| SRR7265388 | embryo | 12hA | 1.73 | MC |
| SRR7265390 | embryo | 12hA | 1.79 | MC |
| SRR7265391 | embryo | 12hN | 1.51 | MC |
| SRR7265394 | embryo | 24hA | 1.53 | MC |
| SRR7265396 | embryo | 24hA | 2.31 | MC |
| SRR7265399 | embryo | 24hN | 0.91 | MC |
| SRR2338868 | endosprem | high_temperature | 0.93 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.27 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.49 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.43 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.44 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.11 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.93 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.23 | MC |
| SRR8060835 | leaf | wild_type | 0.82 | MC |
| SRR8060836 | leaf | wild_type | 1.49 | MC |
| SRR8060837 | leaf | wild_type | 1.40 | MC |
| SRR8240818 | leaf | wild_type | 0.24 | MC |
| SRR8240819 | leaf | wild_type | 0.93 | MC |
| SRR8240820 | leaf | wild_type | 0.93 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.32 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.59 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.02 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.95 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.77 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.40 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.24 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.88 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.16 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.74 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.09 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.38 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.58 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.58 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.81 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.57 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.64 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.97 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.57 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.37 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.69 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.85 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.79 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.79 | MC |
| SRR1761531 | leaf | control | 3.79 | MC |
| SRR504365 | leaf | wt | 0.31 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.19 | MC |
| SRR6417967 | leaf | H2O_control | 2.51 | MC |
| SRR6417969 | leaf | H2O_control | 2.13 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.37 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.25 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.29 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.69 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.47 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.80 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.34 | MC |
| SRR1213693 | leaf | wt | 3.16 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.21 | MC |
| SRR6502090 | leaf | control | 1.75 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.97 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.19 | MC |
| SRR5856928 | leaf | control | 0.80 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 7.08 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.83 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.51 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.49 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.51 | MC |
| SRR6168973 | leaf | none (control) | 0.57 | MC |
| SRR6168974 | leaf | none (control) | 1.44 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.04 | MC |
| SRR8582888 | panicle | AM | 1.28 | MC |
| SRR8582890 | panicle | AM | 1.82 | MC |
| SRR8582891 | panicle | PM | 1.38 | MC |
| SRR8582892 | panicle | PM | 0.62 | MC |
| SRR8582893 | panicle | PM | 0.46 | MC |
| SRR4947496 | root | control | 1.48 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.28 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.05 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.57 | MC |
| SRR5126149 | root | "mock,1_day" | 0.99 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.91 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.12 | MC |
| SRR5126165 | root | "mock,14_days" | 4.73 | MC |
| SRR5126169 | root | "mock,14_days" | 1.04 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.69 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.89 | MC |
| SRR1213694 | root | wt | 0.89 | MC |
| SRR1213695 | root | wt | 3.13 | MC |
| SRR4947480 | root | control | 1.49 | MC |
| SRR4947485 | root | Al | 3.18 | MC |
| SRR4947493 | root | Al | 2.45 | MC |
| SRR4947504 | root | control | 2.33 | MC |
| SRR4947509 | root | Al | 0.67 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.66 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.63 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.82 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502106 | root | control | 0.87 | MC |
| SRR6502107 | root | control | 0.81 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.38 | MC |
| SRR6441555 | seedling | wild_type | 2.70 | MC |
| SRR2154086 | seedling | wt | 1.56 | MC |
| SRR3098742 | seedling | wt | 1.70 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.12 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.85 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.27 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.88 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.95 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.01 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.58 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.76 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.67 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.53 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.92 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.37 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.20 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.90 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.25 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.86 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.54 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.70 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.24 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.80 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.09 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.54 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.91 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.95 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.43 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.88 | MC |