| SRR4457249 | 2nd_leaf | DAH4 | 5.08 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.26 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.41 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.15 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.68 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.38 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.77 | MC |
| SRR6320473 | carpel | wt | 5.45 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.98 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.17 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.82 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.05 | MC |
| SRR7265415 | coleoptile | 4dN | 3.85 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.57 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.68 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.03 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.73 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.83 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.09 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.17 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.40 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.20 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.94 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.12 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.83 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.08 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.45 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.13 | MC |
| SRR4457239 | flag_leaf | DAH20 | 4.07 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.56 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.55 | MC |
| SRR8060835 | leaf | wild_type | 1.91 | MC |
| SRR8060837 | leaf | wild_type | 1.68 | MC |
| SRR8240824 | leaf | wild_type | 2.21 | MC |
| SRR8240826 | leaf | wild_type | 1.53 | MC |
| SRR8240818 | leaf | wild_type | 1.89 | MC |
| SRR8240819 | leaf | wild_type | 2.04 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.53 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.90 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.37 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.02 | MC |
| SRR6417967 | leaf | H2O_control | 3.87 | MC |
| SRR6417968 | leaf | H2O_control | 3.30 | MC |
| SRR6417969 | leaf | H2O_control | 2.64 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.59 | MC |
| SRR5856930 | leaf | salt | 1.83 | MC |
| SRR5856932 | leaf | salt | 1.23 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.97 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.84 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.81 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.52 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.00 | MC |
| SRR6168973 | leaf | none (control) | 2.25 | MC |
| SRR6168974 | leaf | none (control) | 4.41 | MC |
| SRR6168975 | leaf | none (control) | 2.17 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.62 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.65 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.48 | MC |
| SRR6168979 | leaf | none (control) | 0.55 | MC |
| SRR6168980 | leaf | none (control) | 0.76 | MC |
| SRR6168981 | leaf | none (control) | 2.43 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.43 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.27 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.43 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.45 | MC |
| SRR4947489 | root | control | 4.54 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.99 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.49 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.66 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.06 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.18 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.62 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.44 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.92 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.90 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.93 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 7.16 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.37 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.82 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.53 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.86 | MC |